BQ622946

Overview
NameBQ622946
Unique NameBQ622946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11256 contig Csv1_Contig11256:411..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP E+L  HI+DP +N
Sbjct:  190 YPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNN 253          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H+++P +N
Sbjct:  169 YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNN 232          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE  NGRLAM +  GF +Q  VTGKGP ENL  H+ DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNN 254          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A       E K KEL NGRLAM +  GF VQ  VTGKGP +NL  H++DP  N
Sbjct:  189 YPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVAN 252          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEAKE----KELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPG  F+PL  A   EAK     KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   74 YPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 137          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL      EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   48 YPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 35/63 (55.56%), Postives = 40/63 (63.49%), Query Frame = 3
Query:  204 PGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            PGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:  191 PGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 253          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A       E K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:  192 YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVAN 255          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A       E K KE+ NGRLAM + LGF VQ  VTGKGP +NL  H++DP  N
Sbjct:  177 YPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240          
The following BLAST results are available for this feature:
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_WHEAT1.764e-1154.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN1.764e-1154.69Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_PETSP2.303e-1154.69Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB215_PEA2.303e-1154.69Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB22_PINSY3.008e-1154.69Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_RAPSA3.929e-1154.69Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PINTH3.929e-1155.56Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2_PHYPA5.131e-1154.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_DUNTE6.702e-1154.69Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00037 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00037 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622946 ID=BQ622946; Name=BQ622946; organism=Citrus sinensis; type=EST; length=548bp
AGATTGGAATTATTAATGCTCCTCAATGGTATGATGCTGGGAAGGCTGAG
TACTTTGCATCATCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCA
CTATGTGGAGATAAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCA
ACCAAGACCCCATTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGG
TACCCCGGTGGCATCTTCAACCCACTCAACTTTGCACCCACTGACGAGGC
AAAGGAGAAGGAGCTTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGG
GATTTATTGTTCAGCACAATGTGACAGGCAAAGGGCCATTTGAAAACCTC
CTGCAACACATCTCTGACCCATGGCACAACACCATCGTCCAGACACTAAG
TGGTAATTAATCAAAGATGGATTGGCCATCCCGGATCCTGTTTCTTTCTT
TTGTAACCATGAATCTGTAGTTTTTGAGTGAGATTTGAGCATCAATGTAA
ACATGGAAACTCTCAATGTACAGGGGAACTATGATGGTATTTATATTA
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