BQ622948

Overview
NameBQ622948
Unique NameBQ622948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2478 contig Csv1_Contig2478:87..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.513e-41
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 3
Query:   66 NPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            NPKA+PLAD+ LT  ILD+VQQA + +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPY+FVPSK ALGRACGV+RPVI+ SVTSN+ASQLK QI Q+KD IE+LLI
Sbjct:    5 NPKAFPLADAALTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLPLLCEDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126          
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.513e-41
Identity = 86/124 (69.35%), Postives = 100/124 (80.65%), Query Frame = 3
Query:   60 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            A NPKA+PLAD+ LT  ILDL+QQA++YKQLKKGANEATKTLNRGI EFIVMAAD              EDKNVPYVFVPSK ALGRACGV+RPV++ SVT+NEA +L++QIQ +K AIE+LLI
Sbjct:    3 APNPKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEARELQSQIQTVKLAIERLLI 126          
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: SNU13_DEBHA (13 kDa ribonucleoprotein-associated protein OS=Debaryomyces hansenii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.513e-41
Identity = 88/124 (70.97%), Postives = 97/124 (78.23%), Query Frame = 3
Query:   60 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            A NPKA+PLADS LT  ILD+VQQ+ N +QLKKGANEATKTLNRGISEFI+MAADT             EDKNVPYVFVPSK ALGRACGV+RPVIA SVT+NEAS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVIAASVTTNEASAMKNQIYGIKDKIETLLI 126          
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: SNU13_YEAST (13 kDa ribonucleoprotein-associated protein OS=Saccharomyces cerevisiae GN=SNU13 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.313e-40
Identity = 86/124 (69.35%), Postives = 98/124 (79.03%), Query Frame = 3
Query:   60 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            A NPKA+PLAD+ LT  ILD+VQQAAN +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +KTQI  +KD IE LLI
Sbjct:    3 APNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLLI 126          
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: SNU13_CRYNE (13 kDa ribonucleoprotein-associated protein OS=Cryptococcus neoformans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.511e-40
Identity = 84/122 (68.85%), Postives = 95/122 (77.87%), Query Frame = 3
Query:   66 NPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            NPKA+PLA++ LT  ILDL+QQA +YKQLKKGANEATKTLNRGI EFIVM AD              EDKNVPYVF+PSK ALGRACGV+RPVIA SVT+NEA +L  QIQ +K+ IEKLLI
Sbjct:    6 NPKAFPLANAQLTNQILDLIQQAQHYKQLKKGANEATKTLNRGICEFIVMTADVEPIEIVLHLPLLCEDKNVPYVFLPSKTALGRACGVSRPVIAASVTTNEARELNAQIQAVKNEIEKLLI 127          
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: SNU13_KLULA (13 kDa ribonucleoprotein-associated protein OS=Kluyveromyces lactis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.112e-39
Identity = 83/124 (66.94%), Postives = 98/124 (79.03%), Query Frame = 3
Query:   60 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            A NPKA+PLAD+ L+  ILD+VQQA+N +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +K+QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 126          
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: SNU13_CANGA (13 kDa ribonucleoprotein-associated protein OS=Candida glabrata GN=SNU13 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.112e-39
Identity = 84/124 (67.74%), Postives = 96/124 (77.42%), Query Frame = 3
Query:   60 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            A NPKA+PLAD  L+  ILD+VQQAAN +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADEKLSQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKNQIYAVKDKIETLLI 126          
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: SNU13_ASHGO (13 kDa ribonucleoprotein-associated protein OS=Ashbya gossypii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.452e-39
Identity = 83/122 (68.03%), Postives = 97/122 (79.51%), Query Frame = 3
Query:   66 NPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            NPKA+PLAD+ LT  ILD+VQQA+N +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +K+QI  +KD IE LLI
Sbjct:    6 NPKAFPLADAALTQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 127          
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: NH2L1_DROME (NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.224e-39
Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = 3
Query:   57 EAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            E VNPKA+PLAD+ LT  I++L+QQA NY QL+KGANEATKTLNRG+++ +V+A D              EDKNVPYVFV SKQALGRACGV+RP++ACSVT+NE SQLK+QI  ++  IE+LL+
Sbjct:    3 EEVNPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIERLLV 127          
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Match: NH2L1_DICDI (NHP2-like protein 1 homolog OS=Dictyostelium discoideum GN=DDB_G0282243 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.523e-33
Identity = 70/128 (54.69%), Postives = 91/128 (71.09%), Query Frame = 3
Query:   48 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 431
            M   + N KA PLADS LT+TILDL+QQ+ N  QLKKGANE TK ++R  +EF+V+AAD              EDKN+PYVFV SK  LGRAC V+RPV+AC+VT ++ SQLK+QI  +KD++++L I
Sbjct:    1 MADSSNNEKAKPLADSKLTLTILDLIQQSNNLGQLKKGANECTKAVSRSTAEFVVLAADAEPLEILLHIPLLCEDKNIPYVFVSSKSELGRACDVSRPVVACAVTVDDKSQLKSQITNVKDSLDRLWI 128          
The following BLAST results are available for this feature:
BLAST of BQ622948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SNU13_YARLI4.513e-4170.4913 kDa ribonucleoprotein-associated protein OS=Yar... [more]
SNU13_USTMA4.513e-4169.3513 kDa ribonucleoprotein-associated protein OS=Ust... [more]
SNU13_DEBHA4.513e-4170.9713 kDa ribonucleoprotein-associated protein OS=Deb... [more]
SNU13_YEAST1.313e-4069.3513 kDa ribonucleoprotein-associated protein OS=Sac... [more]
SNU13_CRYNE8.511e-4068.8513 kDa ribonucleoprotein-associated protein OS=Cry... [more]
SNU13_KLULA1.112e-3966.9413 kDa ribonucleoprotein-associated protein OS=Klu... [more]
SNU13_CANGA1.112e-3967.7413 kDa ribonucleoprotein-associated protein OS=Can... [more]
SNU13_ASHGO1.452e-3968.0313 kDa ribonucleoprotein-associated protein OS=Ash... [more]
NH2L1_DROME4.224e-3961.60NHP2-like protein 1 homolog OS=Drosophila melanoga... [more]
NH2L1_DICDI4.523e-3354.69NHP2-like protein 1 homolog OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00039 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00039 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622948 ID=BQ622948; Name=BQ622948; organism=Citrus sinensis; type=EST; length=535bp
CATTAGCTGCCACAAAAACCCTAGCCTCCGTCCCCGCCACCACGAAAATG
ACAGGAGAAGCAGTGAACCCTAAAGCTTACCCGCTAGCAGATTCTAATCT
CACAATCACGATACTGGATCTCGTTCAGCAAGCTGCCAATTACAAGCAGC
TCAAAAAGGGCGCCAATGAAGCTACTAAGACTCTTAACAGAGGTATCTCC
GAGTTTATTGTGATGGCTGCTGATACCGAGCCTCTGGAGATTCTTCTTCA
TCTTCCACTGCTTGCAGAGGACAAGAATGTTCCCTATGTTTTTGTCCCTT
CAAAGCAGGCTCTTGGCAGGGCATGTGGGGTCACAAGACCTGTCATTGCT
TGCTCTGTGACCTCAAATGAGGCGAGTCAGTTGAAGACTCAAATTCAACA
GCTGAAGGATGCCATTGAGAAGCTCTTGATATGAATATAATGGGATTCAT
ATTCGGTGGGATGGGCCTCTTTGATGGTGGTTAGAGGCTTTGACTGATGG
TGGTAGTTGTGCTGCTTGGAAATCTTCTATTATTA
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