BQ622949

Overview
NameBQ622949
Unique NameBQ622949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:71..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_CHLRE (Plastocyanin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETE PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.074e-20
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  224 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            V LG D G+L FVP + ++ SGE + F NNAGFPHN+VFDED IPSGV+   I  S +D LN PGETY+V LT  G Y +Y
Sbjct:   51 VKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAI--SRDDYLNAPGETYSVKLTAAGEYGYY 129          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_ULVPE (Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.393e-20
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 2
Query:  224 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            V LGGDDGSLAFVPS  SV++GE I F NNAGFPHN+VFDED +P+GVD   IS   +D LN  GET    L+  G Y  Y
Sbjct:    4 VKLGGDDGSLAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVY 82          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_ULVAR (Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.331e-20
Identity = 48/81 (59.26%), Postives = 56/81 (69.14%), Query Frame = 2
Query:  224 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            V LGGDDG+LAFVPS  SV++GE I F NNAGFPHN+VFDED +P+GVD   IS   +D LN  GET    L+  G Y  Y
Sbjct:    4 VKLGGDDGALAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVY 82          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_CHLFU (Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.894e-19
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  218 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            + V LG D G+L F PSS ++ +GE + + NNAGFPHN+VFDEDE+PSG +    ++S ED LN PGE+Y+      GTY ++
Sbjct:    2 VTVKLGADSGALVFEPSSVTIKAGETVTWVNNAGFPHNIVFDEDEVPSGANAE--ALSHEDYLNAPGESYSAKFDTAGTYGYF 82          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_SCEOB (Plastocyanin, chloroplastic OS=Scenedesmus obliquus GN=PETE PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 6.517e-18
Identity = 47/135 (34.81%), Postives = 70/135 (51.85%), Query Frame = 2
Query:   62 KAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            KA   PA+   +T+KASAS          L+ V                     V LG D G+L F P++ ++ +G+ + + NNAGFPHN+VFDED +P+GV+    ++S +D LN PGE+Y       G Y ++
Sbjct:    7 KAAVAPAKATRTTVKASAS----------LQRVAQAAGVAVAGFSLALSANAANVKLGADSGALVFEPATVTIKAGDSVTWTNNAGFPHNIVFDEDAVPAGVNAD--ALSHDDYLNAPGESYTAKFDTAGEYGYF 129          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_CYAP7 (Plastocyanin OS=Cyanothece sp. (strain PCC 7424) GN=petE PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 2
Query:  224 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            V +G D G L F P   ++ +G+ + + NN   PHN VFD  ++P  V  +KIS     L+  PGE++  T  E GTY++Y
Sbjct:   33 VKMGSDQGLLKFDPPQLTIKAGDTVKWVNNKLAPHNAVFDNSKVPDSVSATKISHKA--LVFSPGESFTTTFDEPGTYTYY 111          
The following BLAST results are available for this feature:
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PLAS_CHLRE1.074e-2058.02Plastocyanin, chloroplastic OS=Chlamydomonas reinh... [more]
PLAS_ULVPE2.393e-2060.49Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1[more]
PLAS_ULVAR5.331e-2059.26Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1[more]
PLAS_CHLFU5.894e-1949.40Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1[more]
PLAS_SCEOB6.517e-1834.81Plastocyanin, chloroplastic OS=Scenedesmus obliquu... [more]
PLAS_CYAP75.908e-1138.27Plastocyanin OS=Cyanothece sp. (strain PCC 7424) G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00040 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00040 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622949 ID=BQ622949; Name=BQ622949; organism=Citrus sinensis; type=EST; length=467bp
TACAGTTACAATGGCTACTGTCACCTCTGCAGCTGTCACCGTCCCAACTT
TCACCGGCCTTAAAGCCGGTGCAACACCAGCCAGAGTTGTTGGTTCCACC
ATGAAGGCCTCAGCCTCTGCTGTCCCAAAGCTCAGCATCAAGGCCACACT
CAAAGATGTTGGAGTGGCCGTTGCGGCCACAGCTGCCAGCGCAATGCTTG
CTAGCAATGCCATGGCCATTGAGGTTTTGCTTGGTGGTGATGATGGGTCC
TTGGCTTTTGTTCCAAGCTCTTTCTCTGTCAGCTCCGGTGAAAAGATTGT
GTTCAAGAACAATGCTGGGTTCCCACACAACGTTGTTTTCGATGAAGATG
AGATTCCGAGTGGTGTTGATGTTTCAAAAATCTCCATGTCTACAGAAGAC
CTTCTCAATGGTCCTGGAGAGACTTATGCTGTTACTCTGACTGAAAAAGG
CACTTACTCTTTTTACT
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