BQ622952

Overview
NameBQ622952
Unique NameBQ622952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10231 contig Csv1_Contig10231:504..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: ICK_MOUSE (Serine/threonine-protein kinase ICK OS=Mus musculus GN=Ick PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.724e-14
Identity = 46/145 (31.72%), Postives = 77/145 (53.10%), Query Frame = 2
Query:   17 VSTRHYRAPEVIL-GLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            VSTR YRAPEV+L    ++ P D+W+VGCI+ E+ +   LF     ++ +  + +VLG                      + DWP+G     +M  +W    +PN +   + +++ + I LL+ LL++DP +R  A +ALR+P+F
Sbjct:  160 VSTRWYRAPEVLLRSTNYSSPIDIWAVGCIMAEVYTLRPLFPGASEIDTIFKICQVLGT-------------------PKKTDWPEGYQLSSAMNFLWPQC-IPNNLKTLIPNASSEAIQLLRDLLQWDPKKRPTASQALRYPYF 284          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: DYR1A_RAT (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Rattus norvegicus GN=Dyrk1a PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 49/166 (29.52%), Postives = 82/166 (49.40%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH-----------------VDHSAGDLI---DLLQGLLRYDPAERLKAREALRHPFFMR 454
            + +R YR+PEV+LG+ ++   D+WS+GCIL+E+ +GE LF     ++ +  +  VLG  P H++ +A  +A K+F +      PDG  S    +   +  + P     H                   H+  D +   DL+  +L YDP  R++   AL+H FF +
Sbjct:  322 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAP-KARKFFEK-----LPDGTWSLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKK 481          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: DYR1A_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Mus musculus GN=Dyrk1a PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 49/166 (29.52%), Postives = 82/166 (49.40%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH-----------------VDHSAGDLI---DLLQGLLRYDPAERLKAREALRHPFFMR 454
            + +R YR+PEV+LG+ ++   D+WS+GCIL+E+ +GE LF     ++ +  +  VLG  P H++ +A  +A K+F +      PDG  S    +   +  + P     H                   H+  D +   DL+  +L YDP  R++   AL+H FF +
Sbjct:  322 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAP-KARKFFEK-----LPDGTWSLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKK 481          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: PPK5_SCHPO (Serine/threonine-protein kinase ppk5 OS=Schizosaccharomyces pombe GN=ppk5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFM 451
            + +R YRAPE+ILGL +    D+WS GCIL EL +G  LF      E L  +  VLGP P   +IR   R++ YF    +   P   T  DS   +  L+       Q ++      +D L   L++DP +R+    AL+H F +
Sbjct:  679 LQSRFYRAPEIILGLEYGKEIDIWSFGCILAELFTGVPLFPGGNETEQLGYIMEVLGP-PPMALIRNSTRSKAYFDSEGK---PHPIT--DSHNRL--LVPSTRTFSQLLNTKQASFLDFLSKCLKWDPKDRITVDSALQHEFIL 815          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: SRPK1_MOUSE (Serine/threonine-protein kinase SRPK1 OS=Mus musculus GN=Srpk1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 43/149 (28.86%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTH------ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 445
            + TR YR+ EV++G G+N P D+WS  C+  EL +G+ LF+ H       + +H+A++  +LG +P  +++ A + ++++F +        G     +    W LL +     +     A    D L  +L   P +R  A E LRHP+
Sbjct:  505 IQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEDYTRDEDHIALIIELLGKVPRKLIV-AGKYSKEFFTK-------KGDLKHITKLKPWGLLEVLVEKYEWPQEEAAGFTDFLLPMLELMPEKRATAAECLRHPW 645          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: DYRK2_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Mus musculus GN=Dyrk2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEK------YFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD----LIDLLQGLLRYDPAERLKAREALRHPFFMR 454
            + +R YRAPEVILG  +  P D+WS+GCIL EL +G  L    +  + LA M  +LG +P   ++ A +RA+       Y R        DG+   +  R+    LR P    +  +   G      +D L+  L +DPA R+   +ALRHP+  R
Sbjct:  381 IQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLG-MPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRR 535          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: DYRK2_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Homo sapiens GN=DYRK2 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEK------YFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD----LIDLLQGLLRYDPAERLKAREALRHPFFMR 454
            + +R YRAPEVILG  +  P D+WS+GCIL EL +G  L    +  + LA M  +LG +P   ++ A +RA+       Y R        DG+   +  R+    LR P    +  +   G      +D L+  L +DPA R+   +ALRHP+  R
Sbjct:  383 IQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLG-MPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRR 537          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: DYR1A_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Homo sapiens GN=DYRK1A PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 48/166 (28.92%), Postives = 82/166 (49.40%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH-----------------VDHSAGDLI---DLLQGLLRYDPAERLKAREALRHPFFMR 454
            + +R YR+PEV+LG+ ++   D+WS+GCIL+E+ +GE LF     ++ +  +  VLG  P H++ +A  +A K+F +      PDG  +    +   +  + P     H                   H+  D +   DL+  +L YDP  R++   AL+H FF +
Sbjct:  322 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAP-KARKFFEK-----LPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKK 481          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: SRPK1_PONAB (Serine/threonine-protein kinase SRPK1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 43/149 (28.86%), Postives = 73/149 (48.99%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLE------HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 445
            + TR YR+ EV++G G+N P D+WS  C+  EL +G+ LF+ H   E      H+A++  +LG +P  +++ A + ++++F +        G     +    W L  +     +     A    D L  +L   P +R  A E LRHP+
Sbjct:  512 IQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIV-AGKYSKEFFTK-------KGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: SRPK1_HUMAN (Serine/threonine-protein kinase SRPK1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 43/149 (28.86%), Postives = 73/149 (48.99%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLE------HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 445
            + TR YR+ EV++G G+N P D+WS  C+  EL +G+ LF+ H   E      H+A++  +LG +P  +++ A + ++++F +        G     +    W L  +     +     A    D L  +L   P +R  A E LRHP+
Sbjct:  512 IQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIV-AGKYSKEFFTK-------KGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652          
The following BLAST results are available for this feature:
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
ICK_MOUSE3.724e-1431.72Serine/threonine-protein kinase ICK OS=Mus musculu... [more]
DYR1A_RAT1.415e-1329.52Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_MOUSE1.415e-1329.52Dual specificity tyrosine-phosphorylation-regulate... [more]
PPK5_SCHPO1.848e-1334.48Serine/threonine-protein kinase ppk5 OS=Schizosacc... [more]
SRPK1_MOUSE2.414e-1328.86Serine/threonine-protein kinase SRPK1 OS=Mus muscu... [more]
DYRK2_MOUSE2.414e-1333.97Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK2_HUMAN2.414e-1333.97Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_HUMAN3.152e-1328.92Dual specificity tyrosine-phosphorylation-regulate... [more]
SRPK1_PONAB4.117e-1328.86Serine/threonine-protein kinase SRPK1 OS=Pongo abe... [more]
SRPK1_HUMAN4.117e-1328.86Serine/threonine-protein kinase SRPK1 OS=Homo sapi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00043 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00043 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622952 ID=BQ622952; Name=BQ622952; organism=Citrus sinensis; type=EST; length=616bp
GGATCACAGCTATGTTGTATCAACACGACATTATCGTGCACCAGAGGTTA
TTTTAGGCCTTGGATGGAATTATCCTTGTGATTTGTGGAGTGTGGGTTGC
ATTCTTATAGAACTTTGCTCCGGCGAGGCTCTTTTTCAAACGCACGAGAA
TTTAGAGCATCTTGCCATGATGGAGAGGGTTTTAGGGCCTCTCCCCCACC
ATATGGTGATAAGAGCTGACCGCCGTGCTGAGAAATATTTTAGGAGAGGT
GCACGACTGGATTGGCCTGATGGTGCAACTTCGAGAGATAGCATGAGGGC
AGTTTGGAAACTTCTCCGTCTCCCGAACCTGATAATGCAGCATGTAGATC
ACTCTGCCGGTGATTTGATTGATCTCCTTCAGGGGCTCCTCCGATATGAT
CCAGCAGAGCGGCTCAAAGCCAGGGAAGCCCTAAGACATCCTTTCTTCAT
GAGAGATGTGAGAAGGTGTGGCTTTCCCTTGTAATTGCAAAGCCTCGTCT
TTGCTATTGACGAGCTTGTTCAATTTTAGAAAAGAAATAATACACAGCCA
TGCACGTGGGGAATGATATTCTATTGGCTCTTTTTTATACATTGCTGGTT
GATAGTAAAATTATGT
back to top