BQ622953

Overview
NameBQ622953
Unique NameBQ622953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622953_ssr84 microsatellite BQ622953_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1335 contig Csv1_Contig1335:92..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.649e-45
Identity = 91/163 (55.83%), Postives = 125/163 (76.69%), Query Frame = 3
Query:  138 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            K+L+IG+SGVGKS+L+L F  D F+ E + TIGVDF++  +A+ G ++KLAIWDTAGQERFRTLT SYYRGAQG+I VYDVT R +F  L + W +E+D Y TN + IK++V NK+D  + RVV+++EG+ FA+ +  LF+E SAKT+  V+  FEEL+ KI+
Sbjct:   13 KILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKL-NHWMQEVDTYCTNDNIIKMMVANKIDMPN-RVVTREEGLKFAKRHRTLFIEASAKTKEGVQCTFEELIEKII 173          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.006e-44
Identity = 100/168 (59.52%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ V L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W  EID Y+ +++  KLLVGNK D  S++VV       FA E G  FLE SAK   NV+Q F  +  +I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYA-SENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.006e-44
Identity = 97/168 (57.74%), Postives = 120/168 (71.43%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT R+++ N+   W +EID Y+ +++  KLLVGNK D  +++VV      +FA   G  FLE SAK   NV+Q F  +  +I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.006e-44
Identity = 98/173 (56.65%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  105 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  KLLVGNK D  +++VV      +FA   G  FLE SAK   NV+Q F  +  +I
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.006e-44
Identity = 98/173 (56.65%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  105 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  KLLVGNK D  +++VV      +FA   G  FLE SAK   NV+Q F  +  +I
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.006e-44
Identity = 98/173 (56.65%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  105 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  KLLVGNK D  +++VV      +FA   G  FLE SAK   NV+Q F  +  +I
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.006e-44
Identity = 98/173 (56.65%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  105 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  KLLVGNK D  +++VV      +FA   G  FLE SAK   NV+Q F  +  +I
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.315e-44
Identity = 95/161 (59.01%), Postives = 116/161 (72.05%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            E D+ FK+LLIGDSGVGKS LLL F  D++ +    TIGVDFKIK + L GK +KL IWDTAGQERFRT+TSSYYRGAQGII+VYD T +D+FTN+   W  EID Y+  ++  KLLVGNK D  +E+VV   +   FA  YG  F+E SAK   NV++CF
Sbjct:    6 EHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQ-WMGEIDRYAC-ENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECF 164          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.315e-44
Identity = 97/173 (56.07%), Postives = 123/173 (71.10%), Query Frame = 3
Query:  105 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            ST   ++DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  KLLVGNK D  +++VV      ++A + G  FLE SAK   NV+Q F  +  +I
Sbjct:    2 STMNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.717e-44
Identity = 98/168 (58.33%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W  EID Y+  ++  KLLVGNK D  ++RVVS     +FA   G  FLE SAK   NV++ F  +  +I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLHEIDRYAC-ENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169          
The following BLAST results are available for this feature:
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB18_CAEEL2.649e-4555.83Ras-related protein Rab-18 OS=Caenorhabditis elega... [more]
YPTC1_CHLRE1.006e-4459.52GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB1B_MACFA1.006e-4457.74Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1A_RAT1.006e-4456.65Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE1.006e-4456.65Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.006e-4456.65Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.006e-4456.65Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1D_DICDI1.315e-4459.01Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB1A_LYMST1.315e-4456.07Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPT1_PHYIN1.717e-4458.33Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00044 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00044 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622953 ID=BQ622953; Name=BQ622953; organism=Citrus sinensis; type=EST; length=649bp
GCCTCCACATTGCTGAACATTTTATGAAAACATCACCTTCAGATCCAAAC
CCATCAGCTTGAACCCAAAAGTCTTCATTTTTATTTGTTTGTTTGATGGC
TTCTTCAACGAGTCAGCAGGAGTTCGATTACTTGTTTAAGTTGCTGTTAA
TTGGAGATTCTGGGGTTGGCAAGAGTACTTTGCTATTGAGTTTCACTTCT
GATACCTTTGAGGAGCTCTCTCCTACCATTGGTGTGGATTTTAAGATAAA
GCATGTTGCTCTTGGTGGTAAAAAAATGAAGCTTGCCATTTGGGACACGG
CTGGGCAGGAAAGATTTAGAACACTAACTAGTTCCTATTACAGGGGAGCC
CAAGGGATAATCATGGTTTATGATGTGACACGACGGGATACATTTACCAA
CCTAGCCGATATTTGGGCTAAAGAAATTGATCTGTACTCAACAAATCAAG
ACTGCATCAAGTTGCTTGTTGGAAACAAAGTTGATAAGGAAAGTGAAAGG
GTTGTCAGCAAAAAAGAGGGTATCGACTTCGCTAGGGAATACGGCTGCCT
TTTTCTGGAGTGTAGTGCTAAAACTCGAGTCAATGTAAAGCAGTGCTTTG
AGGAGCTTGTTTTAAAGATTTTGGACCCCCAAGTCTGTTGAGCGAGGGC
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