BQ622953

Overview
NameBQ622953
Unique NameBQ622953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.253e-39
Identity = 81/160 (50.62%), Postives = 116/160 (72.50%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + V + GK++KL IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L   W ++   +S++ + + +L+GNK D ES R V ++EG  FARE+G +F+E SAKT  NV++ +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSS-NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAY 160          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 8.253e-39
Identity = 86/168 (51.19%), Postives = 121/168 (72.02%), Query Frame = 3
Query:  126 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVKQCFEELVLKIL 623
            D+  ++++IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GKK++L IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D   LLVGNK+D E++R +S+++G  FA++  G  F E SAK   NV + F +LV  IL
Sbjct:   39 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 204          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.078e-38
Identity = 83/168 (49.40%), Postives = 115/168 (68.45%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +D+LFKLLLIGDSGVGK+ L++ F  D F      TIG+DFKI+ V + GK++KL +WDTAGQERF+T+T++YYRGA GII+VYD+T   +F N+ + W K I   + +    +LL+GNK D E++R V +++    ARE+   F E SAK+ VNV + F  L   IL
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQN-WMKSIK-ENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDIL 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.078e-38
Identity = 83/168 (49.40%), Postives = 115/168 (68.45%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +D+LFKLLLIGDSGVGK+ L++ F  D F      TIG+DFKI+ V + GK++KL +WDTAGQERF+T+T++YYRGA GII+VYD+T   +F N+ + W K I   + +    +LL+GNK D E++R V +++    ARE+   F E SAK+ VNV + F  L   IL
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQN-WMKSIK-ENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDIL 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.078e-38
Identity = 86/168 (51.19%), Postives = 120/168 (71.43%), Query Frame = 3
Query:  126 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVKQCFEELVLKIL 623
            D+  ++++IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GKK++L IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D   LLVGNK+D E++R +++++G  FA E  G  F E SAK   NV + F +LV  IL
Sbjct:    4 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIFLKLVDDIL 169          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.839e-38
Identity = 85/168 (50.60%), Postives = 121/168 (72.02%), Query Frame = 3
Query:  126 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVKQCFEELVLKIL 623
            D+  ++++IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GKK++L IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D   LLVGNK+D E++R +++++G  FA++  G  F E SAK   NV + F +LV  IL
Sbjct:   40 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 205          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.096e-38
Identity = 87/167 (52.10%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  102 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            SS + + +D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL +WDTAGQERFRT+T++YYRGA GII+VYDVT   TF N+   W K ++ ++ N +   LLVGNK D ++ RVV+ ++G   A+E G  F+E SAK   NV + F
Sbjct:   10 SSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQ-WFKTVNEHA-NDEAQLLLVGNKSDMDT-RVVTYEQGEALAKELGLPFIESSAKNDDNVNEIF 173          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.096e-38
Identity = 85/173 (49.13%), Postives = 113/173 (65.32%), Query Frame = 3
Query:  105 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +T+   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + + + G+K+KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +L+       +L  TN + + +L+GNK D E++R V+ +E   FA E G LFLE SAKT  NV+  F E   KI
Sbjct:    2 ATTPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.096e-38
Identity = 85/173 (49.13%), Postives = 113/173 (65.32%), Query Frame = 3
Query:  105 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +T+   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + + + G+K+KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +L+       +L  TN + + +L+GNK D E++R V+ +E   FA E G LFLE SAKT  NV+  F E   KI
Sbjct:    2 ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.096e-38
Identity = 85/173 (49.13%), Postives = 113/173 (65.32%), Query Frame = 3
Query:  105 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +T+   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + + + G+K+KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +L+       +L  TN + + +L+GNK D E++R V+ +E   FA E G LFLE SAKT  NV+  F E   KI
Sbjct:    2 ATTPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
The following BLAST results are available for this feature:
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_MOUSE8.253e-3950.63Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB12_MOUSE8.253e-3951.19Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
RAB13_RAT1.078e-3849.40Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_MOUSE1.078e-3849.40Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB12_CANFA1.078e-3851.19Ras-related protein Rab-12 (Fragment) OS=Canis fam... [more]
RAB12_HUMAN1.839e-3850.60Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
SEC4_CANGA4.096e-3852.10Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB14_RAT4.096e-3849.13Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB4.096e-3849.13Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG4.096e-3849.13Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00044 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00044 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622953 ID=BQ622953; Name=BQ622953; organism=Citrus sinensis; type=EST; length=649bp
GCCTCCACATTGCTGAACATTTTATGAAAACATCACCTTCAGATCCAAAC
CCATCAGCTTGAACCCAAAAGTCTTCATTTTTATTTGTTTGTTTGATGGC
TTCTTCAACGAGTCAGCAGGAGTTCGATTACTTGTTTAAGTTGCTGTTAA
TTGGAGATTCTGGGGTTGGCAAGAGTACTTTGCTATTGAGTTTCACTTCT
GATACCTTTGAGGAGCTCTCTCCTACCATTGGTGTGGATTTTAAGATAAA
GCATGTTGCTCTTGGTGGTAAAAAAATGAAGCTTGCCATTTGGGACACGG
CTGGGCAGGAAAGATTTAGAACACTAACTAGTTCCTATTACAGGGGAGCC
CAAGGGATAATCATGGTTTATGATGTGACACGACGGGATACATTTACCAA
CCTAGCCGATATTTGGGCTAAAGAAATTGATCTGTACTCAACAAATCAAG
ACTGCATCAAGTTGCTTGTTGGAAACAAAGTTGATAAGGAAAGTGAAAGG
GTTGTCAGCAAAAAAGAGGGTATCGACTTCGCTAGGGAATACGGCTGCCT
TTTTCTGGAGTGTAGTGCTAAAACTCGAGTCAATGTAAAGCAGTGCTTTG
AGGAGCTTGTTTTAAAGATTTTGGACCCCCAAGTCTGTTGAGCGAGGGC
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