BQ622953

Overview
NameBQ622953
Unique NameBQ622953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.009e-36
Identity = 77/170 (45.29%), Postives = 115/170 (67.65%), Query Frame = 3
Query:  117 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +++D LF+LLLIGDSGVGK+ LL  FT + F      TIGVDFK+K + + G K+++ IWDTAGQER++T+T  YYR AQGI +VYD++   ++ ++   W  ++D Y+  +   K+L+GNK D+E +R V +++G   A+EYG  F E SA T +N+K+ F  L   +L
Sbjct:    3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYAP-EGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVL 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.935e-36
Identity = 90/201 (44.78%), Postives = 124/201 (61.69%), Query Frame = 3
Query:   24 MKTSPS-DPNPSA*TQKSSFLFVCLMASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            M  SPS + N S  +  +SF+       S S  E+D L K+L+IGDSGVGKS +LL F  + F +    TIGVDF I+ + L GKK+KL IWDTAGQERF+T+T+SYYRGA G+I+VYD+T  D+F ++   W  ++D ++ +   +KL+VGNK D  S+R V  K    FA E     +E SAK    + + F +L   I
Sbjct:    1 MGCSPSKEGNGSFSSTSTSFIH-----GSESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKR-WLIDVDRFA-SPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDI 194          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.935e-36
Identity = 82/176 (46.59%), Postives = 114/176 (64.77%), Query Frame = 3
Query:   96 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            MA    + ++DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDTAGQER+R +TS+YYRGA G ++VYDVTRR TF N+ D W KE+  + T+ + + +LVGNK D      V  ++G  +A +    F+E SA    NV+  F E++ +I
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENV-DRWLKELKNH-TDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQI 174          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.834e-36
Identity = 81/171 (47.37%), Postives = 113/171 (66.08%), Query Frame = 3
Query:  117 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            +++++LFK + +GDSGVGKS++LL FT DTF E    TIGVDFKIK V + GK +KL IWDTAGQERFR   +S YRG   +++VYDVT + +F N+A  W +EI+ Y+   + IK+++GNK D  S++VV      +FA      F E SAK  +N++  F  LV   +D
Sbjct:    3 KKYEHLFKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAK-WIQEIERYA-RDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVKLCID 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.539e-36
Identity = 79/170 (46.47%), Postives = 114/170 (67.06%), Query Frame = 3
Query:  114 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            + E+DYLFK +LIGDSGVGKS LL+ FT + F  E   TIGV+F  +++ L  KK+K  IWDTAGQER+R +TS+YYRGA G ++VYD+T++ +F N+   W KE+  ++ + + + +LVGNK D    R VS +E   FA E    F+E SA    NV++ F+ ++ +I
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGR-WLKELREHA-DSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.539e-36
Identity = 84/176 (47.73%), Postives = 112/176 (63.64%), Query Frame = 3
Query:   96 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            MA   +  E+DYLFKL+LIGDSGVGKS LL  FT + F  E   TIGV+F  K + + GK +K  IWDTAGQER+R +TS+YYRGA G ++VYDVTR  TF   A  W KE+  + T+ + + +L+GNK D      VS ++G  FA +    F+E SA    NV+  F E++ +I
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTF-ETAGRWLKELRDH-TDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQI 174          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.539e-36
Identity = 75/168 (44.64%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +D  FK++L+GDSGVGK+ LL+ F    F       T+G+DF+ K + + G K+KL IWDTAGQERFR++T +YYR A  ++++YD+T +D+F N+   W  EI  Y+  QD + +L+GNKVD   ERVV +++G   A+EYG  F+E SAK+ +NV   F  +  ++
Sbjct:   61 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNI-QAWLTEIQEYA-QQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKEL 226          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.115e-35
Identity = 74/168 (44.05%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +D  FK++L+GDSGVGK+ LL+ F    F       T+G+DF+ K + + G K+KL IWDTAGQERFR++T +YYR A  ++++YD+T +D+F N+   W  EI  Y+  QD + +L+GNKVD   +RVV +++G   A+EYG  F+E SA+T +NV   F  +  ++
Sbjct:   64 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNI-QAWLTEIQEYA-QQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKEL 229          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.115e-35
Identity = 83/160 (51.88%), Postives = 113/160 (70.62%), Query Frame = 3
Query:  150 IGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVKQCFEELVLKIL 623
            IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GKK++L IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D   LL GNK+D E++R +S+++G  FA++  G    E SAK   NV + F +LV  IL
Sbjct:    1 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKLVDDIL 158          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.457e-35
Identity = 77/172 (44.77%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            S +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL IWDTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y++N+  I +LVGNK+D    R VS++   +F+      +LE SAK   NV++ F +L  +++
Sbjct:    2 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 171          
The following BLAST results are available for this feature:
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB15_MOUSE1.009e-3645.29Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB1C_DICDI2.935e-3644.78Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAA1B_ARATH2.935e-3646.59Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RABA_DICDI3.834e-3647.37Ras-related protein RabA OS=Dictyostelium discoide... [more]
YPT3_SCHPO6.539e-3646.47GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11E_LOTJA6.539e-3647.73Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAB26_RAT6.539e-3644.64Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB26_MOUSE1.115e-3544.05Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB12_RAT1.115e-3551.88Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
RAB30_MOUSE1.457e-3544.77Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00044 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00044 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622953 ID=BQ622953; Name=BQ622953; organism=Citrus sinensis; type=EST; length=649bp
GCCTCCACATTGCTGAACATTTTATGAAAACATCACCTTCAGATCCAAAC
CCATCAGCTTGAACCCAAAAGTCTTCATTTTTATTTGTTTGTTTGATGGC
TTCTTCAACGAGTCAGCAGGAGTTCGATTACTTGTTTAAGTTGCTGTTAA
TTGGAGATTCTGGGGTTGGCAAGAGTACTTTGCTATTGAGTTTCACTTCT
GATACCTTTGAGGAGCTCTCTCCTACCATTGGTGTGGATTTTAAGATAAA
GCATGTTGCTCTTGGTGGTAAAAAAATGAAGCTTGCCATTTGGGACACGG
CTGGGCAGGAAAGATTTAGAACACTAACTAGTTCCTATTACAGGGGAGCC
CAAGGGATAATCATGGTTTATGATGTGACACGACGGGATACATTTACCAA
CCTAGCCGATATTTGGGCTAAAGAAATTGATCTGTACTCAACAAATCAAG
ACTGCATCAAGTTGCTTGTTGGAAACAAAGTTGATAAGGAAAGTGAAAGG
GTTGTCAGCAAAAAAGAGGGTATCGACTTCGCTAGGGAATACGGCTGCCT
TTTTCTGGAGTGTAGTGCTAAAACTCGAGTCAATGTAAAGCAGTGCTTTG
AGGAGCTTGTTTTAAAGATTTTGGACCCCCAAGTCTGTTGAGCGAGGGC
back to top