BQ622953

Overview
NameBQ622953
Unique NameBQ622953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33
Identity = 74/164 (45.12%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  132 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTI-GVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +FK+LLIGDS VGK++LLL F  ++F+E S  +  VD+K K++ + G+   L IWDTAGQERFRT+TSS+YRGA G+++ YDVT + T+ N+  +W +EI  Y+      ++LVGNK D E  ++V+     ++A   G  F+E SA T VNV++ F  +  +I
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVR-LWMQEIQRYAV-LGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEI 167          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33
Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE--LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            +D   K++L+GDSGVGK+  L+ F    F       T+G+D + K V + G ++KL IWDTAGQERFR++T +YYR AQ ++++YD+T + +F N+   W  EI  Y+  +D + +L+GNK D  SERV+  ++G   AREYG  F+E SAKT +NV+  F
Sbjct:   26 YDLTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIR-AWLTEIHEYA-QRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAF 184          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.181e-33
Identity = 75/176 (42.61%), Postives = 114/176 (64.77%), Query Frame = 3
Query:   96 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            M S  SQ+E+DYL+K++LIGDSGVGKS LL  FT + F  E   TIGV+F  + +   GK +K  +WDTAGQER+R +TS+YYRGA G ++VYD+ ++ T+ ++ + W  E+   + +++   +LVGNK D    R VS  E  +F+ ++   F+E SA    NV+  F+ ++ +I
Sbjct:    1 MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSV-ERWILEL-RENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQI 174          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.767e-33
Identity = 74/169 (43.79%), Postives = 108/169 (63.91%), Query Frame = 3
Query:   99 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVKQCF 599
            ++  + + FDYLFK++LIGDS VGK+ ++  F S  + E    TIGVDF ++ + + GKK+K+ +WDTAGQERFRT+T SYYR A   I+ YD+TRR TF ++   W  EI+ Y    + + +L+GNK D   +R V  ++    A +YG L  LE SAK   N+++ F
Sbjct:    6 SARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPH-WIHEIEKYGA-ANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVF 172          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 79/170 (46.47%), Postives = 102/170 (60.00%), Query Frame = 3
Query:  114 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            ++E +YLFK+++IGDS VGKS LL  FT + F E+   TIGVDF  K + +  K +    WDTAGQERFR +TS YYRGA G ++VYD+T + +F N+   W  E+      QD + ++VGNK D E  R V  KE   FA      FLE SA    NV Q FE L+  I
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTR-WLNEL-REMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDI 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  117 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            + +D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +KL IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +LA        L S N   + +L GNK D + ER V+  E   FA+E   +FLE SA T  NV++ F +    IL+
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  117 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            + +D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +KL IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +LA        L S N   + +L GNK D + ER V+  E   FA+E   +FLE SA T  NV++ F +    IL+
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  117 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            + +D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +KL IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +LA        L S N   + +L GNK D + ER V+  E   FA+E   +FLE SA T  NV++ F +    IL+
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  117 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            + +D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +KL IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +LA        L S N   + +L GNK D + ER V+  E   FA+E   +FLE SA T  NV++ F +    IL+
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 71/168 (42.26%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +D  FK++L+GDSGVGK+ LL+ F    F       T+G+DF+ K V + G K+KL IWDTAGQERFR++T +YYR A  ++++YDVT + +F ++   W  EI  ++   D + +L+GNKVD   ER V +++    A++YG  F+E SAKT +NV   F  +  ++
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSI-QAWLTEIQEHA-QDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
The following BLAST results are available for this feature:
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABG2_DICDI3.967e-3345.12Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB37_MOUSE3.967e-3344.72Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RB11A_DICDI5.181e-3342.61Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB19_HUMAN6.767e-3343.79Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RB11C_DICDI1.154e-3246.47Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB4B_RAT1.154e-3246.78Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.154e-3246.78Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN1.154e-3246.78Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA1.154e-3246.78Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB26_BOVIN1.154e-3242.26Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00044 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00044 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622953 ID=BQ622953; Name=BQ622953; organism=Citrus sinensis; type=EST; length=649bp
GCCTCCACATTGCTGAACATTTTATGAAAACATCACCTTCAGATCCAAAC
CCATCAGCTTGAACCCAAAAGTCTTCATTTTTATTTGTTTGTTTGATGGC
TTCTTCAACGAGTCAGCAGGAGTTCGATTACTTGTTTAAGTTGCTGTTAA
TTGGAGATTCTGGGGTTGGCAAGAGTACTTTGCTATTGAGTTTCACTTCT
GATACCTTTGAGGAGCTCTCTCCTACCATTGGTGTGGATTTTAAGATAAA
GCATGTTGCTCTTGGTGGTAAAAAAATGAAGCTTGCCATTTGGGACACGG
CTGGGCAGGAAAGATTTAGAACACTAACTAGTTCCTATTACAGGGGAGCC
CAAGGGATAATCATGGTTTATGATGTGACACGACGGGATACATTTACCAA
CCTAGCCGATATTTGGGCTAAAGAAATTGATCTGTACTCAACAAATCAAG
ACTGCATCAAGTTGCTTGTTGGAAACAAAGTTGATAAGGAAAGTGAAAGG
GTTGTCAGCAAAAAAGAGGGTATCGACTTCGCTAGGGAATACGGCTGCCT
TTTTCTGGAGTGTAGTGCTAAAACTCGAGTCAATGTAAAGCAGTGCTTTG
AGGAGCTTGTTTTAAAGATTTTGGACCCCCAAGTCTGTTGAGCGAGGGC
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