BQ622953

Overview
NameBQ622953
Unique NameBQ622953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.479e-43
Identity = 96/170 (56.47%), Postives = 119/170 (70.00%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            E+DYLFKLLLIGDSGVGKS LLL F  D++ +    TIGVDFKI+ V   GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W  EID Y+++ +  KLLVGNK D  + +VV+ +    FA E G  F+E SAK   NV+Q F  +   I D
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASD-NVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKD 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.479e-43
Identity = 97/161 (60.25%), Postives = 115/161 (71.43%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            E+DYLFKLLLIGDSGVGKS LLL F  D++ E    TIGVDFKI+ V   GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W  EID Y+ +++  KLLVGNK D    RVVS + G   A E G  FLE SAK   NV++ F
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYA-SENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAF 162          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.238e-43
Identity = 95/168 (56.55%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQER RT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y+ +++  KLLVGNK D  +++VV      +FA   G  FLE SAK   NV+Q F  +  +I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.230e-42
Identity = 88/175 (50.29%), Postives = 123/175 (70.29%), Query Frame = 3
Query:  105 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            S SQ+ +D L KLLLIGDSGVGKS LLL F  D F      TIG+DFKI+ + +G +++KL +WDTAGQERFRT+T++YYRGA GI++VYDVT   +F N+ + W + +  Y+ N+    +LVGNK D + +RVVS ++G   A ++G  FLE S+KT +NV++CF  +  +I D
Sbjct:    2 SHSQRTYDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIEN-WYQNVQSYA-NEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRD 174          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.230e-42
Identity = 88/171 (51.46%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  117 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            +E+DYLFK+++IGDSG GKS+LLL F  +T+ E    TIGVDFKIK V +    +KL IWDTAGQERFRT+TS+YYRGA GII VYDVT + +F ++ + W ++ID Y+T+  C KLL+GNK+D    RVVS  E    A +    ++E SAKT  NV++ F  +   + D
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVC-KLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKD 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.099e-42
Identity = 93/161 (57.76%), Postives = 111/161 (68.94%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            E+DYLFKLLLIGDS VGKS LLL F  D + +    TIGVDFKI+ +   GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYD T  ++F N+   W  EID Y+ N+   KLL+GNK D    +VVS + G   A E G  FLE SAK  +NV+Q F
Sbjct:    4 EYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQ-WLSEIDRYA-NESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAF 162          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.099e-42
Identity = 89/172 (51.74%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +++ +D LFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKIK V L GKK+KL IWDTAGQERF T+T+SYYRGA GI++VYD+T   +F N++  W + ID ++ N+D  ++L+GNK D + +RVV K +G   ARE+G  F E SAK  +N+++ F  L   IL
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDIL 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.099e-42
Identity = 89/172 (51.74%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +++ +D LFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKIK V L GKK+KL IWDTAGQERF T+T+SYYRGA GI++VYD+T   +F N++  W + ID ++ N+D  ++L+GNK D + +RVV K +G   ARE+G  F E SAK  +N+++ F  L   IL
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDIL 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.099e-42
Identity = 89/172 (51.74%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +++ +D LFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKIK V L GKK+KL IWDTAGQERF T+T+SYYRGA GI++VYD+T   +F N++  W + ID ++ N+D  ++L+GNK D + +RVV K +G   ARE+G  F E SAK  +N+++ F  L   IL
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDIL 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.099e-42
Identity = 89/172 (51.74%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +++ +D LFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKIK V L GKK+KL IWDTAGQERF T+T+SYYRGA GI++VYD+T   +F N++  W + ID ++ N+D  ++L+GNK D + +RVV K +G   ARE+G  F E SAK  +N+++ F  L   IL
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDIL 171          
The following BLAST results are available for this feature:
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTM2_MAIZE2.479e-4356.47GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RIC1_ORYSJ2.479e-4360.25Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB1B_PIG3.238e-4356.55Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RYL1_YARLI1.230e-4250.29Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB1_THEPA1.230e-4251.46Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RABD1_ARATH2.099e-4257.76Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB10_PONAB2.099e-4251.74Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE2.099e-4251.74Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN2.099e-4251.74Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA2.099e-4251.74Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00044 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00044 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622953 ID=BQ622953; Name=BQ622953; organism=Citrus sinensis; type=EST; length=649bp
GCCTCCACATTGCTGAACATTTTATGAAAACATCACCTTCAGATCCAAAC
CCATCAGCTTGAACCCAAAAGTCTTCATTTTTATTTGTTTGTTTGATGGC
TTCTTCAACGAGTCAGCAGGAGTTCGATTACTTGTTTAAGTTGCTGTTAA
TTGGAGATTCTGGGGTTGGCAAGAGTACTTTGCTATTGAGTTTCACTTCT
GATACCTTTGAGGAGCTCTCTCCTACCATTGGTGTGGATTTTAAGATAAA
GCATGTTGCTCTTGGTGGTAAAAAAATGAAGCTTGCCATTTGGGACACGG
CTGGGCAGGAAAGATTTAGAACACTAACTAGTTCCTATTACAGGGGAGCC
CAAGGGATAATCATGGTTTATGATGTGACACGACGGGATACATTTACCAA
CCTAGCCGATATTTGGGCTAAAGAAATTGATCTGTACTCAACAAATCAAG
ACTGCATCAAGTTGCTTGTTGGAAACAAAGTTGATAAGGAAAGTGAAAGG
GTTGTCAGCAAAAAAGAGGGTATCGACTTCGCTAGGGAATACGGCTGCCT
TTTTCTGGAGTGTAGTGCTAAAACTCGAGTCAATGTAAAGCAGTGCTTTG
AGGAGCTTGTTTTAAAGATTTTGGACCCCCAAGTCTGTTGAGCGAGGGC
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