BQ622953

Overview
NameBQ622953
Unique NameBQ622953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 95/168 (56.55%), Postives = 118/168 (70.24%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWDTAGQERFRT+TSSYYRG+ GII+VYDVT +++F N   +W +EID Y+T+   +KLLVGNK D + +RVV      +FA      FLE SA    NV+  F  +  +I
Sbjct:    4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATS-TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 86/168 (51.19%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +DYLFKLLLIGDSGVGK+ LL  F+ D F      TIG+DFKI+ + L GKK+KL IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++++ D  ++++GNK D   +R VSK+ G   A +YG  FLE SAK+  NV++ F  L   I+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIM 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 86/168 (51.19%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +DYLFKLLLIGDSGVGK+ LL  F+ D F      TIG+DFKI+ + L GKK+KL IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++++ D  ++++GNK D   +R VSK+ G   A +YG  FLE SAK+  NV++ F  L   I+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIM 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 86/168 (51.19%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +DYLFKLLLIGDSGVGK+ LL  F+ D F      TIG+DFKI+ + L GKK+KL IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++++ D  ++++GNK D   +R VSK+ G   A +YG  FLE SAK+  NV++ F  L   I+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIM 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 86/168 (51.19%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +DYLFKLLLIGDSGVGK+ LL  F+ D F      TIG+DFKI+ + L GKK+KL IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++++ D  ++++GNK D   +R VSK+ G   A +YG  FLE SAK+  NV++ F  L   I+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIM 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.320e-41
Identity = 92/161 (57.14%), Postives = 112/161 (69.57%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT   +F N+   W +EI  Y+ +    +LLVGNK D   +++V      ++A   G  FLE SAK+  NV+Q F
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQ-WMQEIQRYACD-SVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAF 162          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.751e-41
Identity = 94/168 (55.95%), Postives = 115/168 (68.45%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            ++ YLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT + TF N+   W +EID ++  ++  KLLVGNK D  +++VV       FA      FLE SAK   NV+Q F  +  +I
Sbjct:    4 DYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQ-WLQEIDRFAC-ENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEI 169          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.817e-41
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R VSK+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDI 169          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.152e-40
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R VSK+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.152e-40
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R VSK+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169          
The following BLAST results are available for this feature:
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_YEAST1.777e-4156.55GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB8B_RAT1.777e-4151.19Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB1.777e-4151.19Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE1.777e-4151.19Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN1.777e-4151.19Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB1B_DICDI2.320e-4157.14Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1A_DICDI6.751e-4155.95Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB8A_BOVIN8.817e-4150.30Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB8A_RAT1.152e-4050.30Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE1.152e-4050.30Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00044 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00044 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622953 ID=BQ622953; Name=BQ622953; organism=Citrus sinensis; type=EST; length=649bp
GCCTCCACATTGCTGAACATTTTATGAAAACATCACCTTCAGATCCAAAC
CCATCAGCTTGAACCCAAAAGTCTTCATTTTTATTTGTTTGTTTGATGGC
TTCTTCAACGAGTCAGCAGGAGTTCGATTACTTGTTTAAGTTGCTGTTAA
TTGGAGATTCTGGGGTTGGCAAGAGTACTTTGCTATTGAGTTTCACTTCT
GATACCTTTGAGGAGCTCTCTCCTACCATTGGTGTGGATTTTAAGATAAA
GCATGTTGCTCTTGGTGGTAAAAAAATGAAGCTTGCCATTTGGGACACGG
CTGGGCAGGAAAGATTTAGAACACTAACTAGTTCCTATTACAGGGGAGCC
CAAGGGATAATCATGGTTTATGATGTGACACGACGGGATACATTTACCAA
CCTAGCCGATATTTGGGCTAAAGAAATTGATCTGTACTCAACAAATCAAG
ACTGCATCAAGTTGCTTGTTGGAAACAAAGTTGATAAGGAAAGTGAAAGG
GTTGTCAGCAAAAAAGAGGGTATCGACTTCGCTAGGGAATACGGCTGCCT
TTTTCTGGAGTGTAGTGCTAAAACTCGAGTCAATGTAAAGCAGTGCTTTG
AGGAGCTTGTTTTAAAGATTTTGGACCCCCAAGTCTGTTGAGCGAGGGC
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