BQ622953

Overview
NameBQ622953
Unique NameBQ622953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.964e-40
Identity = 84/160 (52.50%), Postives = 115/160 (71.88%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L   W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.964e-40
Identity = 84/160 (52.50%), Postives = 115/160 (71.88%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L   W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.565e-40
Identity = 87/165 (52.73%), Postives = 119/165 (72.12%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            ++ ++DYL KLLLIGDSGVGKS LLL F+  +F      TIG+DFKI+ + L GK++KL IWDTAGQERFRT+T++YYRGA GI++VYDVT   +F N+ + W + I+ ++++ +  K+LVGNK D  ES+R V   +G   A EYG  F E SAKT +NV++ F
Sbjct:    8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD-NVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVF 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.565e-40
Identity = 86/173 (49.71%), Postives = 118/173 (68.21%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            + Q FDY+FKLLLIG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER+RT+T++YYRGA G +++YD+  +++FT + D WA +I  YS +   + +LVGNK D E ERVVS ++G   A + G  F E SAK  +NVKQ FE LV  I D
Sbjct:   15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQD-WATQIKTYSWDNAQV-ILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICD 185          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.565e-40
Identity = 87/165 (52.73%), Postives = 119/165 (72.12%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCF 599
            ++ ++DYL KLLLIGDSGVGKS LLL F+  +F      TIG+DFKI+ + L GK++KL IWDTAGQERFRT+T++YYRGA GI++VYDVT   +F N+ + W + I+ ++++ +  K+LVGNK D  ES+R V   +G   A EYG  F E SAKT +NV++ F
Sbjct:    8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD-NVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVF 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.351e-40
Identity = 85/171 (49.71%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  117 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V  G K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F ++ D W  +I  YS  ++   +LVGNK D +SERVVS   G   A + G  F E SAK  +NVK  FE+LV  I D
Sbjct:   17 QNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQD-WCTQIKTYSW-ENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICD 185          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.351e-40
Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  108 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELV 611
            +S Q FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK D E ERVVS + G   A   G  F E SAK  +NVKQ FE LV
Sbjct:   14 SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 180          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.351e-40
Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  108 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELV 611
            +S Q FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK D E ERVVS + G   A   G  F E SAK  +NVKQ FE LV
Sbjct:   14 SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 180          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.351e-40
Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  108 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELV 611
            +S Q FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK D E ERVVS + G   A   G  F E SAK  +NVKQ FE LV
Sbjct:   14 SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 180          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.351e-40
Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  108 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELV 611
            +S Q FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK D E ERVVS + G   A   G  F E SAK  +NVKQ FE LV
Sbjct:   14 SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 180          
The following BLAST results are available for this feature:
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_CHICK1.964e-4052.50Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA1.964e-4052.50Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RB1BV_BETVU2.565e-4052.73Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB3D_RAT2.565e-4049.71GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
ARA3_ARATH2.565e-4052.73Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB3_CAEEL3.351e-4049.71Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3A_RAT3.351e-4049.11Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG3.351e-4049.11Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE3.351e-4049.11Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA3.351e-4049.11Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00044 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00044 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622953 ID=BQ622953; Name=BQ622953; organism=Citrus sinensis; type=EST; length=649bp
GCCTCCACATTGCTGAACATTTTATGAAAACATCACCTTCAGATCCAAAC
CCATCAGCTTGAACCCAAAAGTCTTCATTTTTATTTGTTTGTTTGATGGC
TTCTTCAACGAGTCAGCAGGAGTTCGATTACTTGTTTAAGTTGCTGTTAA
TTGGAGATTCTGGGGTTGGCAAGAGTACTTTGCTATTGAGTTTCACTTCT
GATACCTTTGAGGAGCTCTCTCCTACCATTGGTGTGGATTTTAAGATAAA
GCATGTTGCTCTTGGTGGTAAAAAAATGAAGCTTGCCATTTGGGACACGG
CTGGGCAGGAAAGATTTAGAACACTAACTAGTTCCTATTACAGGGGAGCC
CAAGGGATAATCATGGTTTATGATGTGACACGACGGGATACATTTACCAA
CCTAGCCGATATTTGGGCTAAAGAAATTGATCTGTACTCAACAAATCAAG
ACTGCATCAAGTTGCTTGTTGGAAACAAAGTTGATAAGGAAAGTGAAAGG
GTTGTCAGCAAAAAAGAGGGTATCGACTTCGCTAGGGAATACGGCTGCCT
TTTTCTGGAGTGTAGTGCTAAAACTCGAGTCAATGTAAAGCAGTGCTTTG
AGGAGCTTGTTTTAAAGATTTTGGACCCCCAAGTCTGTTGAGCGAGGGC
back to top