BQ622953

Overview
NameBQ622953
Unique NameBQ622953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622953_ssr84 microsatellite BQ622953_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1335 contig Csv1_Contig1335:92..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.749e-40
Identity = 81/167 (48.50%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +DYLFKLLLIGDSGVGK+  L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R VS+++G   A  +G  F+E SAK  +N++  F  L   I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRN-WVRNIEEHA-SPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDI 169          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.749e-40
Identity = 85/173 (49.13%), Postives = 117/173 (67.63%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            + Q FDY+FKLLLIG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER+RT+T++YYRGA G +++YD+  +++FT + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  +NVKQ FE LV  I D
Sbjct:   15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQD-WATQIKTYSWDNAQV-ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICD 185          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 85/173 (49.13%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            + Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER+RT+T++YYRGA G I++YDVT  D+F ++ D W  +I  YS +   + +LVGNK D E +RV+S + G   A + G  F E SAK  VNVK  FE LV  I D
Sbjct:   14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQD-WVTQIKTYSWDNAQV-ILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICD 184          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  108 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            +S Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +L GNK D E ERVVS + G     + G  F E SAK  +NVKQ FE LV  I D
Sbjct:   22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICD 193          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  108 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            +S Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +L GNK D E ERVVS + G     + G  F E SAK  +NVKQ FE LV  I D
Sbjct:   22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICD 193          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 85/173 (49.13%), Postives = 116/173 (67.05%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            S Q FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 185          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 85/173 (49.13%), Postives = 116/173 (67.05%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            S Q FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 185          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 85/173 (49.13%), Postives = 116/173 (67.05%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            S Q FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 185          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 85/173 (49.13%), Postives = 116/173 (67.05%), Query Frame = 3
Query:  111 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            S Q FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 185          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 89/167 (53.29%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  123 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKI 620
            +D LFKLLLIGDSGVGKS LLL F  D + E    TIGVDFKI+ + L GK +KL IWDTAGQERF T+TSSYYRGA G ++VYDVT ++++ N+   W +EID ++ +++  KLLVGNK D  +++VV      +FA   G  FLE SAK   NV+Q F  +  +I
Sbjct:    5 YDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQ-WLQEIDRHA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
The following BLAST results are available for this feature:
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_CHICK9.749e-4048.50Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB3D_MOUSE9.749e-4049.13Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3_DROME1.273e-3949.13Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB3C_RAT1.273e-3948.28Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE1.273e-3948.28Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB3B_MOUSE1.273e-3949.13Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU1.273e-3949.13Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_HUMAN1.273e-3949.13Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3B_BOVIN1.273e-3949.13Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB1C_HUMAN1.273e-3953.29Putative Ras-related protein Rab-1C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00044 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00044 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622953 ID=BQ622953; Name=BQ622953; organism=Citrus sinensis; type=EST; length=649bp
GCCTCCACATTGCTGAACATTTTATGAAAACATCACCTTCAGATCCAAAC
CCATCAGCTTGAACCCAAAAGTCTTCATTTTTATTTGTTTGTTTGATGGC
TTCTTCAACGAGTCAGCAGGAGTTCGATTACTTGTTTAAGTTGCTGTTAA
TTGGAGATTCTGGGGTTGGCAAGAGTACTTTGCTATTGAGTTTCACTTCT
GATACCTTTGAGGAGCTCTCTCCTACCATTGGTGTGGATTTTAAGATAAA
GCATGTTGCTCTTGGTGGTAAAAAAATGAAGCTTGCCATTTGGGACACGG
CTGGGCAGGAAAGATTTAGAACACTAACTAGTTCCTATTACAGGGGAGCC
CAAGGGATAATCATGGTTTATGATGTGACACGACGGGATACATTTACCAA
CCTAGCCGATATTTGGGCTAAAGAAATTGATCTGTACTCAACAAATCAAG
ACTGCATCAAGTTGCTTGTTGGAAACAAAGTTGATAAGGAAAGTGAAAGG
GTTGTCAGCAAAAAAGAGGGTATCGACTTCGCTAGGGAATACGGCTGCCT
TTTTCTGGAGTGTAGTGCTAAAACTCGAGTCAATGTAAAGCAGTGCTTTG
AGGAGCTTGTTTTAAAGATTTTGGACCCCCAAGTCTGTTGAGCGAGGGC
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