BQ622955

Overview
NameBQ622955
Unique NameBQ622955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:603..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.689e-31
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  128 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 73/130 (56.15%), Postives = 92/130 (70.77%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 74/130 (56.92%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  125 EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 74/130 (56.92%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP ANN
Sbjct:  125 EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 69/127 (54.33%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  131 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 257          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 69/127 (54.33%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YRI  G   ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   68 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 194          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 69/128 (53.91%), Postives = 89/128 (69.53%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YR+     L   ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  128 EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    I+   + A+ A ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP  NN
Sbjct:  124 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 75/130 (57.69%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP ANN
Sbjct:  126 EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANN 252          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 69/127 (54.33%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YRI  G   ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  117 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 243          
The following BLAST results are available for this feature:
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB24_PETSP3.689e-3155.12Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB24_SOLLC4.818e-3156.15Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_ORYSJ4.818e-3156.92Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.818e-3156.92Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PEA4.818e-3154.33Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_CUCSA4.818e-3154.33Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_ARATH4.818e-3153.91Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_MAIZE4.818e-3155.12Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI4.818e-3157.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_CUCSA4.818e-3154.33Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00046 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00046 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622955 ID=BQ622955; Name=BQ622955; organism=Citrus sinensis; type=EST; length=456bp
GCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCT
TGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTG
TTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTAT
AGAATCACCAACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCC
ATTTGACCCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAA
AAGTGAAGGAGATCAAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGT
TTCTTTCTCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTTGC
TAAACATCTCAGTGATCCTTTTGCCAACAACTTGCTTACCGTGATCTCCG
GAAACGTAGAGAGAGCTCCCACCCTGTGATTTCAGTTGTTCTGATGGTCT
TTTCAC
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