BQ622955
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.453e-29 Identity = 68/127 (53.54%), Postives = 84/127 (66.14%), Query Frame = 1 Query: 16 EAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 EAVWFK GA + L+Y G + N+V +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLA F+M GFF+QA VTG+GPV+NL HL++P NN Sbjct: 115 EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.453e-29 Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 1 Query: 16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 EAVWFK G+ + L+Y G I+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ F LKVKE+K GRLAM +M GFF+QA VTG+GP+ENLA H++DP NN Sbjct: 127 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.453e-29 Identity = 72/127 (56.69%), Postives = 86/127 (67.72%), Query Frame = 1 Query: 16 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G E D L PGG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN Sbjct: 128 EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 5.890e-29 Identity = 66/127 (51.97%), Postives = 86/127 (67.72%), Query Frame = 1 Query: 16 EAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 EA WFK G+ + L+Y G ++ L+ ++VL+G E YRI G ++ D L+PGG FDPLGLA+ P FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E+LA H++DP NN Sbjct: 128 EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 7.693e-29 Identity = 71/127 (55.91%), Postives = 86/127 (67.72%), Query Frame = 1 Query: 16 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G E D L+PG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN Sbjct: 12 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 3.818e-28 Identity = 65/127 (51.18%), Postives = 87/127 (68.50%), Query Frame = 1 Query: 16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 E VWFK G+ + L++ G ++ + A+ A ++VL+G E Y + G ++ D L+ GG FDPLGL DP++FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 126 EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.232e-27 Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1 Query: 118 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.232e-27 Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1 Query: 118 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.232e-27 Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1 Query: 118 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 4.221e-27 Identity = 70/129 (54.26%), Postives = 87/129 (67.44%), Query Frame = 1 Query: 16 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381 E VWFK G+ + L+Y G + + AV+ +++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL DP ANN Sbjct: 129 EPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256 The following BLAST results are available for this feature:
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >BQ622955 ID=BQ622955; Name=BQ622955; organism=Citrus sinensis; type=EST; length=456bpback to top |