BQ622966

Overview
NameBQ622966
Unique NameBQ622966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.205e-19
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  127 ARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.205e-19
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  127 ARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.205e-19
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  127 ARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 1.205e-19
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  127 ARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.056e-19
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 252
            ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:  127 ARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.685e-19
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K     GPL
Sbjct:  127 ARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYTPNRGPL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.685e-19
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:  127 ARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.685e-19
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 252
            ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:  127 ARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.507e-19
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 249
            ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+VS+KWGFT ++R  Y + K++ R++ DG N K++  HG LAQ
Sbjct:  127 ARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLAQ 208          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.982e-19
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    4 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 243
            ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+   +    ++ R++PDG   K +   GPL
Sbjct:  122 ARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQKRLIPDGCGVKYVPGRGPL 201          
The following BLAST results are available for this feature:
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL10_PAPAN1.205e-1956.2560S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]
RL10_MOUSE1.205e-1956.2560S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]
RL10_MACFA1.205e-1956.2560S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_HUMAN1.205e-1956.2560S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10B_SCHPO2.056e-1954.2260S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10_PONAB2.685e-1956.2560S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10L_HUMAN2.685e-1955.0060S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10A_SCHPO2.685e-1953.0160S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_DICDI3.507e-1951.2260S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10_CHICK5.982e-1953.7560S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00057 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00057 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622966 ID=BQ622966; Name=BQ622966; organism=Citrus sinensis; type=EST; length=426bp
TGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGA
CAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGT
TTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAG
TTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTGTCCC
AGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCTCAAC
GCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATATTTACTGT
CTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTTCCATTTC
GTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGACATGTTTA
TTTGGTTTAACTATGTGATCCTTGCA
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