BQ622972

Overview
NameBQ622972
Unique NameBQ622972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.531e-62
Identity = 108/143 (75.52%), Postives = 133/143 (93.01%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LD+ERP+YTNLNR++SQV+SS+TASLRFDGALNVD+ EFQTNLVPYPRIHF L++Y P+ISAEKAYHE LSV++ITNS FEP++ M
Sbjct:  158 DYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRIISQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQM 300          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.136e-60
Identity = 106/143 (74.13%), Postives = 131/143 (91.61%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +YGKKSKL F +YP+PQ S++VVEPYNSVL+TH+ LEH+D   ++DNEAIYDIC R+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVP+PRIHF L +YAP+IS+++AYHEQLSVAEIT+S FEP++ M
Sbjct:  157 EYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHTTLEHSDCVFMVDNEAIYDICHRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQM 299          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.798e-59
Identity = 107/143 (74.83%), Postives = 129/143 (90.21%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKKSKL F+VYP+PQVSTSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERP Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAP+ISA KA+HE  SVAEITN+ FEP++ M
Sbjct:  160 DYGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPGYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPLISAAKAHHEANSVAEITNACFEPNNQM 302          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 8.140e-59
Identity = 101/143 (70.63%), Postives = 129/143 (90.21%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +YGKKSKL   +YP+PQ +TSVVEPYNS+L+TH+ LEH+D   ++DNEAI+DIC+R+LD+ RPTYTNLNRL+ Q++SS+TASLRF+GALNVD+TEFQTNLVPYPRIHF L++Y+P+ISAEKAYHEQLSV EIT++ FEP++ M
Sbjct:  160 EYGKKSKLEIAIYPAPQSATSVVEPYNSILTTHTTLEHSDCCFMVDNEAIFDICQRNLDVSRPTYTNLNRLIGQIVSSITASLRFEGALNVDLTEFQTNLVPYPRIHFPLTTYSPIISAEKAYHEQLSVGEITSACFEPANQM 302          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.175e-57
Identity = 105/143 (73.43%), Postives = 127/143 (88.81%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +Y KKSKL F+VYP  QVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDIC R+LDIERPTYTNLNRL+ Q++SS+TASLRF+GALNVD+ EFQTNLVPYPRIHF L++YA +ISAEKAYHEQLSV EITN+ FE S+ M
Sbjct:   35 EYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLNRLIGQIVSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQM 177          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.834e-57
Identity = 105/142 (73.94%), Postives = 126/142 (88.73%), Query Frame = 3
Query:    9 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            GKKSKL F VYPSPQVSTSVVEPYNSVLSTHSLLEHTDV+ +LDNEAIY+IC++SLDIE+PTYTNLNRL++QVISSLT+SLRF G LN+D+ + QTNLVP+PR+HF+L SYAPVIS EK+ HE ++V  ITNS F  +++MA
Sbjct:   71 GKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKKSLDIEKPTYTNLNRLIAQVISSLTSSLRFPGPLNLDINDIQTNLVPFPRLHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNIMA 212          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.300e-56
Identity = 106/145 (73.10%), Postives = 127/145 (87.59%), Query Frame = 3
Query:    3 DYG-KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            DYG KKSKL F VYPSPQVSTSVVEPYNSVLSTHSLLEHTDV+ +LDNEAIY+IC+ SLDIE+PTYTNLNRL++QVISSLT+SLRF G LN+D+ + QTNLVP+PR+HF+L SYAPVIS EKA+HE ++V  IT++ F   ++MA
Sbjct:  166 DYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKNSLDIEKPTYTNLNRLIAQVISSLTSSLRFPGQLNLDINDIQTNLVPFPRLHFVLCSYAPVISREKAHHETITVDNITSAVFSEKNIMA 310          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.450e-56
Identity = 102/143 (71.33%), Postives = 123/143 (86.01%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKK KL F VYP+PQV+TSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERP Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAP++SA KA HE  SV EI+ S FEP+S M
Sbjct:  160 DYGKKCKLEFCVYPAPQVATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPIVSAAKAAHEANSVQEISMSCFEPNSQM 302          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 8.424e-56
Identity = 102/143 (71.33%), Postives = 125/143 (87.41%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERP+Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +Y+PVISA+KA HE  SV +IT S FEP++ M
Sbjct:  160 DYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPSYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISADKASHEANSVQDITMSCFEPNNQM 302          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 1.100e-55
Identity = 102/143 (71.33%), Postives = 122/143 (85.31%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+ LEH D + ++DNEAIYDICRR+L +ERP Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV E+T S FEP++ M
Sbjct:  160 DYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQM 302          
The following BLAST results are available for this feature:
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
TBA2_CAEEL3.531e-6275.52Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA2_CHICK1.136e-6074.13Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA1_PNECA2.798e-5974.83Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA2_HOMAM8.140e-5970.63Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA3_CHICK1.175e-5773.43Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA_DICPU5.834e-5773.94Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA_DICDI1.300e-5673.10Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA_MYCGR6.450e-5671.33Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA1_EMENI8.424e-5671.33Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA2_NEUCR1.100e-5571.33Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00063 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622972 ID=BQ622972; Name=BQ622972; organism=Citrus sinensis; type=EST; length=434bp
TTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCT
CAGGTCTCCACTTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCA
CTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGACAATGAGGCCA
TTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTCCTACCTATACT
AACCTCAATAGACTTGTTTCTCAGGTCATTTCTTCATTGACTGCCTCACT
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCC
back to top