BQ622972

Overview
NameBQ622972
Unique NameBQ622972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.847e-49
Identity = 96/144 (66.67%), Postives = 117/144 (81.25%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA-SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            DYGKK+KL F VYP+PQ +TSVVEPYNS+L+TH+ LEH+DV  ++DNEAIYDICRR+L IERP+Y N NRL++Q  S +TA  L FD ALNVD+ EFQTNLVPYPRIHF L+SY+PV+SA KA HE  SV E+T   FEP++ M
Sbjct:  160 DYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNLGIERPSYENSNRLMAQGQSPITAIMLLFDCALNVDLNEFQTNLVPYPRIHFPLASYSPVVSAGKASHESNSVMEVTIVCFEPNNQM 303          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.185e-44
Identity = 77/103 (74.76%), Postives = 97/103 (94.17%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPY 311
            +YGKKSKLGF++YP+PQVST++V+PYNS+L+TH+ LEH+D A ++DN+AIYDIC  +LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLV Y
Sbjct:   99 NYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSY 201          

HSP 2 Score: 29.6462 bits (65), Expect = 1.185e-44
Identity = 17/38 (44.74%), Postives = 21/38 (55.26%), Query Frame = 1
Query:  319 STSCFPPMHQSSQLRRPTMNNSQLLRSPTVPLSPHL*W 432
            STS +PPMHQSS  +R T ++    R P   LS    W
Sbjct:  204 STSPWPPMHQSSLQKRYTTSSCWWQRLPMPALSLPTRW 241          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.059e-42
Identity = 74/142 (52.11%), Postives = 113/142 (79.58%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            Y KK+KL   ++PSP++S+ VVEPYN+VL+TH++++  +   ++DNE+IY IC++ L +  P+Y +LN+L++Q +SS+TASLRF+G LNVD+ EF TNLVP+PR HF + SYAP+++ EKA  + LSV E+T+S F+P+S+M
Sbjct:  166 YTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMVDNESIYKICQKQLGVHSPSYFHLNQLIAQAMSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLM 307          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.644e-38
Identity = 72/91 (79.12%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  159 ICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            IC+R+LDIERP+YTNLNRL+SQV+SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKAYHEQL+VAE+T++ FEP++ M
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQM 91          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.351e-37
Identity = 74/99 (74.75%), Postives = 87/99 (87.88%), Query Frame = 3
Query:  135 LDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            +DNEAIYDICRR+L IERP YTNLNRL++ V+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV+EITN+ FEP++ M
Sbjct:    1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEITNACFEPNNQM 99          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_PENDI (Tubulin beta chain OS=Penicillium digitatum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.414e-36
Identity = 68/135 (50.37%), Postives = 97/135 (71.85%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +VVEPYN+ LS H L+EH+D    +DNEA+YDIC R+L + +P+Y +LN LVS V+S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S   + + Q+SV E+T   F+P +MMA
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICMRTLKLSQPSYGDLNHLVSAVMSGVTTSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGGSSYRQVSVPELTQQMFDPKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.071e-34
Identity = 67/134 (50.00%), Postives = 93/134 (69.40%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            F+V+PSP+VS +VVEPYN+ LS H L+E+ D   ++DNEA+YDIC R+L +  PTY +LN LVS  +S +T SLRF G LN D+ +   NL+P+PR+HF +  +AP+ S     H  LSVAE+T   F+  +MM
Sbjct:  167 FSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQHRALSVAELTQQMFDAKNMM 300          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 4.068e-34
Identity = 66/135 (48.89%), Postives = 94/135 (69.63%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S    +   +SV E+T   F+P +MMA
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTVSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHHFRAVSVPELTQQMFDPKNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB6_CHICK (Tubulin beta-6 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.313e-34
Identity = 66/135 (48.89%), Postives = 93/135 (68.89%), Query Frame = 3
Query:   30 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            F+V PSP+VS +VVEPYN++LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  LSV E+T   F+  +MMA
Sbjct:  167 FSVVPSPKVSDTVVEPYNAILSIHQLIENTDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSLTMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALSVPELTQQMFDARNMMA 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB4_CAEEL (Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.313e-34
Identity = 66/144 (45.83%), Postives = 95/144 (65.97%), Query Frame = 3
Query:    3 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMA 434
            +Y  +  + F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA
Sbjct:  158 EYPDRIMMTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNMMA 301          
The following BLAST results are available for this feature:
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
TBA_AJECA5.847e-4966.67Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA4B_HUMAN1.185e-4474.76Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBA1_ENTHI4.059e-4252.11Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA_OCTVU4.644e-3879.12Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBAA_PNECA1.351e-3774.75Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBB_PENDI7.414e-3650.37Tubulin beta chain OS=Penicillium digitatum GN=TUB... [more]
TBB_BABBO1.071e-3450.00Tubulin beta chain OS=Babesia bovis PE=3 SV=1[more]
TBB_NEUCR4.068e-3448.89Tubulin beta chain OS=Neurospora crassa GN=tub-2 P... [more]
TBB6_CHICK5.313e-3448.89Tubulin beta-6 chain OS=Gallus gallus PE=1 SV=1[more]
TBB4_CAEEL5.313e-3445.83Tubulin beta-4 chain OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00063 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622972 ID=BQ622972; Name=BQ622972; organism=Citrus sinensis; type=EST; length=434bp
TTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCT
CAGGTCTCCACTTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCA
CTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGACAATGAGGCCA
TTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTCCTACCTATACT
AACCTCAATAGACTTGTTTCTCAGGTCATTTCTTCATTGACTGCCTCACT
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCC
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