BQ622972

Overview
NameBQ622972
Unique NameBQ622972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.828e-19
Identity = 47/144 (32.64%), Postives = 89/144 (61.81%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMM 431
            Y KK    ++V+P+  ++S  VV+PYNS+L+   L ++ D  V+LDN A+  I    L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M
Sbjct:  161 YPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.076e-18
Identity = 50/145 (34.48%), Postives = 84/145 (57.93%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYH-EQLSVAEITNSAFEPSSMM 431
            + KK    ++V+P+ Q    VV+PYNS+L+   L+ H D  V+LDN A+  I    L ++ P++   N+LVS VI++ T +LR+ G +N D+     +L+P PR HF+++SY P  S   +KA    + +V ++     +P + M
Sbjct:  161 FPKKLIQTYSVFPNAQEGDVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAASTQTLRYPGYMNNDLVGIIASLIPTPRCHFLMTSYTPFTSDQIDKAKTIRRTTVLDVMRRLLQPKNRM 305          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.076e-18
Identity = 46/144 (31.94%), Postives = 87/144 (60.42%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMM 431
            Y KK    ++V+P+  ++S  VV+PYNS+L+   L ++ D  V+LDN  +  I    L I+ P++  +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M
Sbjct:  161 YPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.405e-18
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 356
            Y KK    ++V+P       VV+PYNS+LS   L  H D  ++LDN A+  IC+  L ++  ++   N+LVS V+S+ T +LR+ G +N D+     +L+P PR HF+ +SY P  S
Sbjct:  161 YPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTPFTS 277          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.396e-18
Identity = 47/145 (32.41%), Postives = 85/145 (58.62%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYHEQLSVAEITNSAFEPSSMM 431
            + KK    ++V+P+  ++S  VV+PYNS+L+   L +  D  V+LDN A+  I    L I+ PT+T +N LVS ++S  T +LR+   +N ++     +L+P P++HF+++ Y P++S    K    + +V ++     +P +MM
Sbjct:  161 FPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMM 305          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.129e-18
Identity = 49/143 (34.27%), Postives = 84/143 (58.74%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMM 431
            + KK    ++V+P    S+ VV+ YNSVL+   L+E+ D  V+LDN A++ I   +L I++PT    N LVS V+S+ T +LR+ G +N D+     +L+P P+ HF+++ Y P+ I  +     + SV ++     +P ++M
Sbjct:  161 FPKKIIQTYSVFPDD--SSVVVQQYNSVLTLKRLIENADSTVVLDNNALHRIVGENLRIDQPTMDQTNSLVSTVMSASTTTLRYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIM 301          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.087e-18
Identity = 48/143 (33.57%), Postives = 85/143 (59.44%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            + KK    ++V+ +   ST VV  PYN VLS   L+E+ D  V+LDN A++ +       + PT+ ++N LV++++S+ TA  RF+ A+   +     +L P+P +HF+ S+ +PV+   + +  + SVA++T    +P+SMM
Sbjct:  163 FPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIR--YLDLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMM 303          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 347
            Y KK    ++V+P+ Q VS  VV+PYNS+L+   L  + D  V+LDN A+  I    L  + PT+   N+LVS V+S+ T +LR+ G +N D+     +L+P PR HF+L+SY P
Sbjct:  161 YPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTP 275          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 44/114 (38.60%), Postives = 70/114 (61.40%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 347
            + KK    ++V+P  Q +  VV PYNS+L+   L ++ D  V+LDN A+  I    L ++ P++   NRLVS V+S+ T +LR+ G ++ D+     +L+P PR HF+L+SY P
Sbjct:  161 FPKKLIQTYSVFPDTQAADVVVNPYNSLLAMRRLTQNADSVVVLDNAALSRIVADRLHVQEPSFQQTNRLVSTVMSASTTTLRYPGYMHNDLVGIIASLIPTPRSHFLLTSYTP 274          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.553e-17
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE 362
            + KK    ++V+P+ + VS  VV+PYNS+L+   L  + D  V+LDN A+  I    L I+ PT+   N+LVS V+S+ T +LR+ G +N D+     +L+P PR HF+ +SY P  S +
Sbjct:  161 FPKKIVQTYSVFPNNRSVSDVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQ 280          
The following BLAST results are available for this feature:
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
TBG1_MOUSE4.828e-1932.64Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]
TBG_COPC71.076e-1834.48Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG1_CANFA1.076e-1831.94Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBG_USTVI1.405e-1838.46Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]
TBG2_DROME2.396e-1832.41Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG_DICDI3.129e-1834.27Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBG_CAEEL4.087e-1833.57Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_SCHPO5.338e-1841.74Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBG_EMENI5.338e-1838.60Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG_SCHJP1.553e-1739.17Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00063 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622972 ID=BQ622972; Name=BQ622972; organism=Citrus sinensis; type=EST; length=434bp
TTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCT
CAGGTCTCCACTTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCA
CTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGACAATGAGGCCA
TTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTCCTACCTATACT
AACCTCAATAGACTTGTTTCTCAGGTCATTTCTTCATTGACTGCCTCACT
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCC
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