BQ622972

Overview
NameBQ622972
Unique NameBQ622972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.553e-17
Identity = 48/149 (32.21%), Postives = 84/149 (56.38%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQL------SVAEITNSAFEPSSMM 431
            Y KK    F+V+P+  ++S  VV+PYNS+L+   L    D  V+LDN A+  I    L I+ P+++ +N LVS ++S  T +LR+   +N ++      L+P P++HF+++ Y P+ S    + +QL      +V ++     +P +MM
Sbjct:  161 YPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMM 309          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.028e-17
Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 350
            Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+
Sbjct:  113 YSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPL 228          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.028e-17
Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 350
            Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+
Sbjct:  161 YSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPL 276          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.028e-17
Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  144 EAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMM 431
            EA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM
Sbjct:    1 EALYDICFRTLKLVTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 96          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17
Identity = 46/122 (37.70%), Postives = 71/122 (58.20%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 368
            Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L I  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A
Sbjct:  161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQA 282          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17
Identity = 47/149 (31.54%), Postives = 84/149 (56.38%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE------QLSVAEITNSAFEPSSMM 431
            Y KK    ++V+P+   S+ VV +PYNS+L+   L  H D  V+LDN A+  I    L + +P    +N L++ V+++ T +LR+ G +N D+     +L+P PR HF+++ Y P ++AE A  +      + +V ++     +P ++M
Sbjct:  161 YSKKLIQTYSVFPNQSESSDVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERLHLHKPDVQQINSLIATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTP-LTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIM 308          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 350
            Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+
Sbjct:  161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPL 276          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 368
            Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A
Sbjct:  161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQA 282          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.902e-17
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 350
            Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+
Sbjct:  161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPL 276          
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.902e-17
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 3
Query:    6 YGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 368
            Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A
Sbjct:  161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQA 282          
The following BLAST results are available for this feature:
BLAST of BQ622972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
TBG1_DROME1.553e-1732.21Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG3_MAIZE2.028e-1740.17Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBG1_MAIZE2.028e-1740.17Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBB3_ANEPH2.028e-1740.63Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]
TBG_PHYPA4.519e-1737.70Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBG_CHLRE4.519e-1731.54Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG2_MAIZE4.519e-1737.93Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG2_ARATH4.519e-1736.89Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG2_ORYSJ5.902e-1737.93Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG1_ARATH5.902e-1736.89Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00063 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622972 ID=BQ622972; Name=BQ622972; organism=Citrus sinensis; type=EST; length=434bp
TTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCT
CAGGTCTCCACTTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCA
CTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGACAATGAGGCCA
TTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTCCTACCTATACT
AACCTCAATAGACTTGTTTCTCAGGTCATTTCTTCATTGACTGCCTCACT
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCC
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