BQ622989

Overview
NameBQ622989
Unique NameBQ622989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.542e-54
Identity = 97/177 (54.80%), Postives = 122/177 (68.93%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 529
            +CG CYE++CVN   WCL G  T++VTAT+FC          GGWCN P++HF++S+  F  +A+ +A +VPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRTGW PM RNWGQNWQ +  L GQ LSFEVT   GRTV +Y+VAP  W F +T+ G QF
Sbjct:   82 ACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGKQF 258          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.663e-54
Identity = 97/174 (55.75%), Postives = 120/174 (68.97%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDP--KWCLP-GTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 517
            +CG CY I C  D   +WC P G + VTATN C          GGWCNPP++HFD+SQP ++ I  YRAG+VPV YRRV C RRGG+RFT+ G  +F LVL+ NV G+G V AVS++G+ TGW  MSRNWG NWQS   L GQ LSF VTT+ G+ +   +VAPAGW FG+T+S
Sbjct:   75 ACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTFS 248          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 9.659e-54
Identity = 94/177 (53.11%), Postives = 124/177 (70.06%), Query Frame = 2
Query:    5 SCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 526
            SCG CY I C     P+WC  GT + +TATN C          GGWCNPP+ HFD+SQP ++ I  YRAG+VPV Y++V C R+GG+RFT++G +YF LVLITNV G+G V A+S+KGS+TGW P++RNWG NWQ N+ L GQ+LSF VT++ G+T+   +V P  W FG T++  Q
Sbjct:   75 SCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWWEFGTTFTSNQ 251          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.659e-54
Identity = 96/177 (54.24%), Postives = 124/177 (70.06%), Query Frame = 2
Query:    5 SCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 529
            SCG+C E++CVN  +WCL G+  ++VTAT+FC          GGWCN P++H +LS   F  IA+ RA ++P+ YRRV CGRRGG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSFEVT   G+T+ SY+VAP  W FG TY G QF
Sbjct:   78 SCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQF 254          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.794e-53
Identity = 93/182 (51.10%), Postives = 123/182 (67.58%), Query Frame = 2
Query:    2 LSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQFR 532
            L+CG CY++ C    D  WC PG ++ +TATNFC          GGWCNPP+ HFD++QP ++ I  YR G++PV Y+RVPC ++GG+RFTINGH YF LVL+TNVG AG + A+ +KGS++  W  M+ NWG  W S  YL GQ LSF VT +DG+T+   NV   GW FG+T+ S  QF+
Sbjct:   81 LACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTFASNIQFK 262          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.181e-51
Identity = 97/177 (54.80%), Postives = 120/177 (67.80%), Query Frame = 2
Query:    5 SCGSCYEIKCVND--PKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 526
            SCG CY I C     P+WC  GT + VTATN C          GGWCNPP+ HFD+SQP ++ I  Y+AG+VPV Y+RV C R+GG+RFT+ G +YF LVLITNV G+G V +  IKG+ TGW  MSRNWG NWQS   L GQ+LSF VTT+ G+ +   +VAPA W FG+T+S  Q
Sbjct:   76 SCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWWQFGQTFSTYQ 252          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 9.995e-51
Identity = 88/177 (49.72%), Postives = 121/177 (68.36%), Query Frame = 2
Query:    5 SCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 526
            SCG CY I C     P+WC  G  + +TATN C          GGWCNPP+ HFD+++P +  I  Y+AG++PV Y++V C R+GGIRFT+ G ++F LVL++NV G+G V +VS+KG  TGW  ++RNWG NWQ N+ L GQ+LSF VT++ G+T+  YNV P+ WSFG T++  Q
Sbjct:   75 SCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWWSFGMTFTSNQ 251          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.305e-50
Identity = 86/174 (49.43%), Postives = 122/174 (70.11%), Query Frame = 2
Query:    5 SCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 517
            SCG CY+I C +  +P+WCL G T+ +T TN C          GGWCNPP+ HFD+++P +  I  Y+AG+VPV Y+RVPC ++GG+RFT+ G +YF LVLI+NV G+G + +V +KG  T   P+SRNWG NWQS+  L GQ+L+F VT++ G+T+   N+ PA W FG+++S
Sbjct:   80 SCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSFS 253          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.798e-50
Identity = 91/172 (52.91%), Postives = 117/172 (68.02%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSF-GRTYSG 520
            CG+CYEI C + P+WCLPG+I +TATNFC            WCNPPQ+HFDLSQP+F  IA+Y+AGVVPV +RRVPC + GG++F I G+ +F ++L  NVGGAG V A+ IKG+RT W  M +NWGQ W +   L GQ LSF +TTSDG      +V P  W   G+++ G
Sbjct:  139 CGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPND--NWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDG 308          
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.443e-49
Identity = 90/177 (50.85%), Postives = 122/177 (68.93%), Query Frame = 2
Query:    8 CGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTY-SGAQFR 532
            CG C++I C   P      + +VTATN C          GGWCNPP+ HFD+++P F  +A +RAG++PVAYRRVPC R GG+RF   G+SY+ L+ + NVGGAGD+ ++++KGSRT W  MS NWG ++Q+ + L GQSLSF VT+ + G T+ ++NVAPA WS G+TY S A FR
Sbjct:   86 CGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTYKSTANFR 262          
The following BLAST results are available for this feature:
BLAST of BQ622989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
EXP16_ORYSJ2.542e-5454.80Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ5.663e-5455.75Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP28_ORYSJ9.659e-5453.11Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH9.659e-5454.24Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP13_ORYSJ4.794e-5351.10Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ1.181e-5154.80Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ9.995e-5149.72Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ1.305e-5049.43Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH3.798e-5052.91Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXPA7_ARATH1.443e-4950.85Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00080 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00080 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622989 ID=BQ622989; Name=BQ622989; organism=Citrus sinensis; type=EST; length=671bp
TTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAAT
GGTGCCTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCCACCG
AACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCA
ACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAG
CTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGGGGA
GGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGAT
CACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGAT
CTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAA
AGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAAG
CGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCCT
TTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCAT
TAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAAGT
AGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATATATATATAT
ATAATATAGAAGTAGCTATGC
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