BQ622995

Overview
NameBQ622995
Unique NameBQ622995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 57/124 (45.97%), Postives = 83/124 (66.94%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 383
            D+KRG VA + ++ P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++  V+
Sbjct:  310 DIKRGDVAGHPENPPT-VADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.829e-25
Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = 3
Query:    6 VKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL-------------EKEPK------FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 392
            VKD+KRG V  ++K+DP      F + VII +H   I NGY PVLDCHT+HIA KF+ +++K D+R GK+              + EP+        K G++  V + PTK MVVE +S Y PLGRFAVRDM++TVAVGVI+ V+ ++
Sbjct:  333 VKDIKRGDVCGDTKNDPPIPTECFLANVIIQDHKN-IRNGYTPVLDCHTAHIACKFASILSKKDKR-GKQTHDVSDDTEWATKDDAEPRNNRMNIAAKTGESVNVWLQPTKAMVVEAYSMYSPLGRFAVRDMKKTVAVGVIQCVQPRN 478          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.120e-25
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            D++RG V  ++ D+P + A  F  Q++++ HP  I  GY PV   HTS IA +   L  K+D ++G+  E+ P FLK GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  SV++K
Sbjct:  298 DVRRGDVCGHA-DNPPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIALNKKLDPKTGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            D++RG V  ++ D+P + A  F  Q++++ HP  I  GY PV   HTS IA +   L  K+D ++G+  E+ P F+K GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  SV++K
Sbjct:  298 DVRRGDVCGHT-DNPPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLISLDKKLDPKTGQVKEEHPTFIKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 56/128 (43.75%), Postives = 82/128 (64.06%), Query Frame = 3
Query:    9 KDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 392
            KD+K+G V  +  + P   A  FT+Q++++ HP  +  GY PV   HT+ +A  F EL  K++  +G+  E+ P FLK GDA +VK++PTKPMV+E   + P LGRFA+RDM  TVA G+   V+ K+
Sbjct:  301 KDIKKGDVLGHPDNIPT-VAEEFTAQIVVLQHPSVMTVGYTPVFHAHTAQVACTFMELQKKLNPATGEVKEENPDFLKAGDAAIVKIMPTKPMVIENVKEIPQLGRFAIRDMGMTVAAGMCIDVKAKN 427          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 56/125 (44.80%), Postives = 86/125 (68.80%), Query Frame = 3
Query:    9 KDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 383
            +D++RG V     + P   A    ++V+I+ HP  IG GYAPV+  HT+ + V+  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FS++P LGRFA+RDM +T+A G I  V+
Sbjct:  314 EDVRRGDVLGKVDNVPT-VAEEIVARVVILWHPTAIGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSEFPALGRFALRDMGRTIAAGQIIEVK 437          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 368
            D+KRG VA  +++ P+  A  F +Q++++ HPG +  GY PV   HT+ +A  F  L  K+D  +G+  E+ P FLK GDA +V + PTKPMV+E   + P +GRFA+RDM QTVA G+
Sbjct:  288 DIKRGDVAGTTQNPPS-VAKEFKAQIVVLQHPGVMTVGYTPVFHAHTAQVACTFLSLDVKLDPATGQPKEENPDFLKTGDAALVTIKPTKPMVIENIKEIPHMGRFAIRDMGQTVAAGM 405          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.186e-24
Identity = 53/124 (42.74%), Postives = 83/124 (66.94%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 383
            D+KRG VA +  D P   A  F +++ ++ HP  I  GY PV+  HT+ ++ +  E+  K+D ++G+ +E+ P+FLK GDA +V+  P KP+VVE FS+ P LGRFA+RDM +TV +G++  V+
Sbjct:  306 DIKRGDVAGHL-DKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVK 428          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.450e-24
Identity = 52/125 (41.60%), Postives = 83/125 (66.40%), Query Frame = 3
Query:    9 KDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 383
            +DLKRG V  +  + P   A    +++ ++ HP  IG GY PV+  HT+ +  +  EL++++D  +G+ +E++P+F+K GD  MV++ P KP+VVE FSD P LGRF++RDM +TVA G I  ++
Sbjct:  313 QDLKRGDVVGHLNNPPT-VAEEIVARIAVLEHPTTIGVGYTPVMHVHTATVPTQIIELISRLDPATGQTVEQKPQFIKRGDVAMVRLKPLKPVVVERFSDLPALGRFSLRDMGRTVAAGQIIEIK 436          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.505e-24
Identity = 52/128 (40.62%), Postives = 80/128 (62.50%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 386
            A  +LKRG V   + + P      FT+Q++++NHP  I  GY PV   HT+ +A +  E+V  I+ + G  L+++P F+K GD  +VK++P + +V+E  S++P LGRFA+RDM  TVA G    +EK
Sbjct:  297 AKNELKRGDVCGPANNPPT-VVKGFTAQIVVLNHPSVIAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423          
The following BLAST results are available for this feature:
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_IGNH42.822e-2645.97Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1AS_PORPU1.829e-2545.95Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_METMA3.120e-2544.44Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METAC4.075e-2543.65Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_META34.075e-2543.75Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]
EF1A_PYRIL5.322e-2544.80Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_METST5.322e-2545.38Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_AERPE1.186e-2442.74Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_CALMQ3.450e-2441.60Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
EF1A_PICTO4.505e-2440.63Elongation factor 1-alpha OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00086 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00086 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622995 ID=BQ622995; Name=BQ622995; organism=Citrus sinensis; type=EST; length=660bp
TTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGAT
GATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCATCATGAA
CCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCACA
CCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATTGATAGG
CGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGA
CGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAAACCT
TCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAG
ACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGATCCCACAGG
TGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAATTTTTATGG
GTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTATTTTCTTG
TCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTATTTGCTTCC
ACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTTAACTGGCT
GTGGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATAGCACTAA
ATTGAGTTGT
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