Overview
Name BQ622995
Unique Name BQ622995
Type EST
Organism Citrus sinensis (Sweet orange)
Sequence length 660
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match:
ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)
HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 39/123 (31.71%), Postives = 69/123 (56.10%), Query Frame = 3
Query: 12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 380
D++ G+V +++K+ P F +Q+ I+ P + GY+ V+ HT+ V F++L+ K+D+ + K +K P F G + ++ P+ +E F DY +GRF +RD TVAVG + +
Sbjct: 540 DVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660
The following BLAST results are available for this feature:
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 171
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 2.32e-12 / Id = 31.71 Sequence ERF3_SCHPO
Match Name E-value Identity Description
ERF3_SCHPO 2.319e-12 31.71 Eukaryotic peptide chain release factor GTP-bindin... [more]
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Properties
Property Name Value
Genbank description USDA-FP_00086 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00086 5, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>BQ622995 ID=BQ622995; Name=BQ622995; organism=Citrus sinensis; type=EST; length=660bp TTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGAT GATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCATCATGAA CCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCACA CCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATTGATAGG CGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGA CGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAAACCT TCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAG ACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGATCCCACAGG TGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAATTTTTATGG GTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTATTTTCTTG TCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTATTTGCTTCC ACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTTAACTGGCT GTGGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATAGCACTAA ATTGAGTTGT back to top