BQ622995

Overview
NameBQ622995
Unique NameBQ622995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1008..1666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.670e-52
Identity = 99/129 (76.74%), Postives = 114/129 (88.37%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            +VKD++RG VA +SK+DP  EA +FT+QVII+NHPGQIG GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  316 SVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.941e-51
Identity = 94/133 (70.68%), Postives = 118/133 (88.72%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 401
            +VK+++RG+VA +SK+DP + AA+F +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVVE FS+YPPLGRFAVRDMRQTVAVGVIK+V+ K+ +G
Sbjct:  316 SVKEIRRGYVAGDSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.941e-51
Identity = 98/133 (73.68%), Postives = 117/133 (87.97%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 401
            +VKD++RG+VASN+K+DPA+EAA+FT+QVII+NHPGQIGNGYAPVLDCHT HIA KF+ + TKIDRRSGKELE EPKF+K+GDA +V M P KPM VE+F+DYPPLG  +  DMRQTVAVGVIKSV KK+ TG
Sbjct:  304 SVKDIRRGYVASNAKNDPAKEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.941e-51
Identity = 97/129 (75.19%), Postives = 114/129 (88.37%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            +VKD++RG VA +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VETFSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  316 SVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.324e-51
Identity = 95/130 (73.08%), Postives = 114/130 (87.69%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 392
            +VKD++RG V S+SK DPA+EA  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  316 SVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.647e-51
Identity = 98/129 (75.97%), Postives = 113/129 (87.60%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            +VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  316 SVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.647e-51
Identity = 96/129 (74.42%), Postives = 114/129 (88.37%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            +VKD++RG VA +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  316 SVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.375e-51
Identity = 91/133 (68.42%), Postives = 115/133 (86.47%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 401
            +VKDL+RG+VAS+SK+DPA++  NF +QVI++NHPGQI  GYAPVLDCHT+HIA KF E+ +K+DRRSGK LE+EPKF+K+G+A +V+M+P KPM VE F+ YPPLGRFAVRDM+QTVAVGVIK V KK+  G
Sbjct:  304 SVKDLRRGYVASDSKNDPAKDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKEQKG 436          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 7.375e-51
Identity = 92/133 (69.17%), Postives = 115/133 (86.47%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 401
            +VK+++RG VA +SK+DP +   +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSVEK + TG
Sbjct:  315 SVKEVRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSEKTG 447          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.375e-51
Identity = 93/133 (69.92%), Postives = 116/133 (87.22%), Query Frame = 3
Query:    3 AVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 401
            +VKD++RG V S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D +G
Sbjct:  316 SVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
The following BLAST results are available for this feature:
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A0_XENLA6.670e-5276.74Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A_ORYLA1.941e-5170.68Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_EUGGR1.941e-5173.68Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A3_XENLA1.941e-5175.19Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_CAEEL4.324e-5173.08Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_CHICK5.647e-5175.97Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A2_XENLA5.647e-5174.42Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_STYLE7.375e-5168.42Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_COCIM7.375e-5169.17Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A2_OSCTI7.375e-5169.92Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00086 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00086 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622995 ID=BQ622995; Name=BQ622995; organism=Citrus sinensis; type=EST; length=660bp
TTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGAT
GATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCATCATGAA
CCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCACA
CCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATTGATAGG
CGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGA
CGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAAACCT
TCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAG
ACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGATCCCACAGG
TGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAATTTTTATGG
GTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTATTTTCTTG
TCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTATTTGCTTCC
ACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTTAACTGGCT
GTGGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATAGCACTAA
ATTGAGTTGT
back to top