BQ623005

Overview
NameBQ623005
Unique NameBQ623005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623005_ssr477 microsatellite BQ623005_ssr477:477..488. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED  L + V  +G   WN I       R GKSCRLRW N L P +N+  F+      ++  H+L GN+W++IA+  PGRTDN VKN+
Sbjct:   16 KGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNY 109          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED  L + V  +G   WN I       R GKSCRLRW N L P +N+  F+      ++  H+L GN+W++IA+  PGRTDN VKN+
Sbjct:   16 KGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNY 109          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.657e-16
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 3
Query:  285 GHTKLCA-----RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKN 581
            G    CA     RG W P ED +L   + ++G  NW  + +     R GKSCRLRW N L P + R  F+      ++  H L GNKW+ IA   PGRTDN +KN
Sbjct:    4 GRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKN 108          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.082e-16
Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W P ED KL   + + G  NW  + + L G  R GKSCRLRW N L P I R  FS      ++  H L GNKW+ IA   PGRTDN +KN+
Sbjct:   15 KGPWLPEEDDKLTAYINENGYGNWRSLPK-LAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNY 108          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.943e-16
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 3
Query:  285 GHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G +K   +G W   ED+ L++ + +YG   W+ +       R  KSCRLRW N L P I R  FS      LL  H+L GN+W++IA   PGRT N VKN+
Sbjct:    3 GSSKGLRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNY 103          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKN 581
            +G W P ED KL   + ++G   W+ + + L G  R GKSCRLRW N L P + R AFS      ++  H   GN+W+ IA   PGRTDN +KN
Sbjct:   14 KGLWSPEEDEKLLNYITRHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKN 106          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  285 GHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G +K   +G W   ED+ L++ + +YG   W+ +       R  KSCRLRW N L P I R   S      LL  HRL GN+W++IA   PGRT N VKN+
Sbjct:    3 GSSKGLRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNY 103          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.019e-15
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED +L   V  +G + W+ IA+ + G  R+GKSCRLRW N L P + R   S      +L  H  +GN+W+ IAR  PGRTDN +KN+
Sbjct:   10 KGPWTEQEDLQLVCTVRLFGERRWDFIAK-VSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNY 103          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.149e-15
Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W   ED  L++ +  +G   W+ +  N  G  R GKSCRLRW N L P I R   S      ++  H L GN+W++IA   PGRTDN +KNH
Sbjct:   16 RGAWTDHEDKILRDYITTHGEGKWSTLP-NQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNH 109          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.149e-15
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKN 581
            +G W P ED  L   + ++G  NW  + +     R GKSCRLRW N L P I R  FS      ++  H L GN+W+ IA   PGRTDN +KN
Sbjct:   14 KGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKN 106          
The following BLAST results are available for this feature:
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
GL1_ARATH2.730e-1642.55Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY2.730e-1642.55Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYB1_MAIZE4.657e-1640.95Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB39_ARATH6.082e-1646.32Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MY114_ARATH7.943e-1641.58Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB86_ARATH1.770e-1543.62Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB75_ARATH2.311e-1541.58Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ3.019e-1543.16Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
TT2_ARATH5.149e-1543.16Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB4_ORYSJ5.149e-1543.01Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00096 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00096 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623005 ID=BQ623005; Name=BQ623005; organism=Citrus sinensis; type=EST; length=586bp
GTGGCGATGGCAATGTTTTCAATGGAGTTCATCAAGGGATGAACTTTATG
GCTCCTTCTTCTCATCTTTCTCTGTCAAACACTTTTGGGACTAAAAATCC
TGAAACTGGGTTTCAGATTTTGAGCCCTTGTCCTATGGAGATAAATAAGA
AACCATGGGAAGCTAGGAGAATCTGTGTTGAGGAGAGAGATGGGGTCTTT
GGTGTTCATAAAAATAAGGGGCTGTCTTTGGATTTGGGCGAGGAAGTTGA
GGATGTTATTAAGCGCCCTGTTTCTGGAAAAAATGGCCACACTAAGCTCT
GTGCTAGAGGCCATTGGAGGCCAGCGGAAGATGCGAAGCTTAAAGAGCTG
GTTGCTCAATATGGTCCTCAAAATTGGAACTTGATCGCTGAGAATCTTGA
AGGAAGATCAGGGAAGAGTTGCAGATTGAGATGGTTTAATCAGCTGGATC
CAAGAATCAACAGGAGGGCTTTCAGTGAAGAAGAAGAAGAGAGGCTGTTA
GCTGCTCATAGGTTGTACGGTAACAAATGGGCCATGATTGCCAGACTGTT
CCCCGGAAGAACTGATAATGCTGTCAAGAATCATTG
back to top