BQ623005

Overview
NameBQ623005
Unique NameBQ623005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623005_ssr477 microsatellite BQ623005_ssr477:477..488. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W   ED  L   V  +G   W  + +     R GKSCRLRW N L P I R   S      ++  HRL GN+W++IA   PGRTDN +KN+
Sbjct:   14 RGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 3
Query:  261 KRPVSGKNGHTKLCA-----RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            K+PVS K   T  C      RG W   ED  L   + + G   W  + +     R GKSCRLRW N L P + R   +      +L  HRL GN+W++IA   PGRTDN +KN+
Sbjct:    7 KKPVSKKT--TPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNY 118          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED  L   V  +G + W+ IA+ + G  R+GKSCRLRW N L P + R   +      +L  H  +GN+W+ IAR  PGRTDN +KN+
Sbjct:    9 KGPWTEQEDILLVNFVHLFGDRRWDFIAK-VSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNY 102          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 3
Query:  282 NGHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            N H     +G W   ED  L   ++ +G   WN IA +    R+GKSCRLRW N L P + R   +      ++  H  +GN+W+ IA+  PGRTDN +KN+
Sbjct:    7 NSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNY 108          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.783e-15
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED  L   V  +G + W+ +A+ + G  R+GKSCRLRW N L P + R   +      +L  H  +GN+W+ IAR  PGRTDN +KN+
Sbjct:   10 KGPWTEQEDILLVNFVHLFGDRRWDFVAK-VSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNY 103          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W P ED  L   + ++GP NW  I  N    R  KSCRLRW N L P I R  F+      ++    L GN+WA IA   P RTDN +KN+
Sbjct:   14 KGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.957e-14
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 3
Query:  261 KRPVSGKNGHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            K+P + ++   +   +G W   ED  L   +A +G   WN +A +    R+GKSCRLRW N L P + R   +      ++  H  +GN+W+ IA+  PGRTDN +KN+
Sbjct:    3 KKPCNSQDVEVR---KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNY 108          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED +L   V  +G + W+ +A+ + G  R+GKSCRLRW N L P +     S      ++  H  +GN+W+ IAR  PGRTDN +KN+
Sbjct:   10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAK-VSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNY 103          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  285 GHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G +K   +G W   ED+ L+  + +YG   W+ +       R  KSCRLRW N L P I R   S      LL  H+L GN+W++IA   PGRT N VKN+
Sbjct:    3 GSSKGLRKGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNY 103          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = 3
Query:  285 GHTKLCARGH-----WRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G +  C + H     W   ED +L + +  +G   W  + ++    R GKSCRLRW N L P + R  F+      ++  H L GNKW++IA   PGRTDN +KN+
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 107          
The following BLAST results are available for this feature:
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYBC_MAIZE6.725e-1542.55Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB5_ARATH6.725e-1539.47Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB48_ARATH6.725e-1542.11Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB40_ANTMA6.725e-1538.24Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB59_ARATH8.783e-1541.05Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB06_ANTMA1.498e-1442.55Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB05_ANTMA1.957e-1435.78Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYBA1_ORYSJ2.555e-1440.00Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MYB90_ARATH2.555e-1440.59Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYB6_ARATH3.337e-1436.79Transcription repressor MYB6 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00096 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00096 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623005 ID=BQ623005; Name=BQ623005; organism=Citrus sinensis; type=EST; length=586bp
GTGGCGATGGCAATGTTTTCAATGGAGTTCATCAAGGGATGAACTTTATG
GCTCCTTCTTCTCATCTTTCTCTGTCAAACACTTTTGGGACTAAAAATCC
TGAAACTGGGTTTCAGATTTTGAGCCCTTGTCCTATGGAGATAAATAAGA
AACCATGGGAAGCTAGGAGAATCTGTGTTGAGGAGAGAGATGGGGTCTTT
GGTGTTCATAAAAATAAGGGGCTGTCTTTGGATTTGGGCGAGGAAGTTGA
GGATGTTATTAAGCGCCCTGTTTCTGGAAAAAATGGCCACACTAAGCTCT
GTGCTAGAGGCCATTGGAGGCCAGCGGAAGATGCGAAGCTTAAAGAGCTG
GTTGCTCAATATGGTCCTCAAAATTGGAACTTGATCGCTGAGAATCTTGA
AGGAAGATCAGGGAAGAGTTGCAGATTGAGATGGTTTAATCAGCTGGATC
CAAGAATCAACAGGAGGGCTTTCAGTGAAGAAGAAGAAGAGAGGCTGTTA
GCTGCTCATAGGTTGTACGGTAACAAATGGGCCATGATTGCCAGACTGTT
CCCCGGAAGAACTGATAATGCTGTCAAGAATCATTG
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