BQ623006

Overview
NameBQ623006
Unique NameBQ623006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.595e-29
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            +PC PG  Y GRG + +  NYNYG  G A+ VD+LN+P+ +  ++ ++F++A+W WMTP +  +PS HD   G W+P+  D  A RV GFG   N++ G   CG G D  + + I  Y  Y  ++GV      P + L CG Q  F
Sbjct:  170 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTP-QSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV-----SPGDNLDCGNQRSF 309          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 55/147 (37.41%), Postives = 85/147 (57.82%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPFN 497
            +PC PG  Y+GRG + + +NYNYG  G A+  ++LN+P+ +  NA ++F++A+W WMT  +  +PS HD   G W P+  D  A R+ G+G   N++ G   CG G D  + + I  Y  Y  ++GV      P + + CG Q+ FN
Sbjct:  186 WPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMT-AQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGV-----SPGDNIDCGNQKSFN 326          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 65/163 (39.88%), Postives = 89/163 (54.60%), Query Frame = 3
Query:    6 KEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            +E      YC    ++  PC PG SY+GRG + L  NYNYG  G A+ VD+L +P+ +  + T++F+ AMW WMT  +  +PS+H    G W P+  D  A RV GFG   N++ G   CG G D  + + I  Y  Y D++GVG    G N  L C  Q PF
Sbjct:  163 QERGATSNYCTPSAQW--PCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMT-AQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVG---YGNN--LDCYSQRPF 317          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPFN 497
            +PC PG +YH RG + + +NYNYG  GEA+  D+L +PE +  + T+AF+ A+W WMT     QPS H    G W PT  D+ A R  G+G T N+L G   C  G+  +  + ++ Y  Y D++GVG    GPN  L C  Q PF+
Sbjct:  191 WPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVG---YGPN--LDCFGQAPFD 330          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPFN 497
            +PC PG +YH RG + + +NYNYG  GEA+  D+L +PE +  + T+AF+ A+W WMT     QPS H    G W PT  D+ A R  G+G T N+L G   C  G+  +  + ++ Y  Y D++GVG    GPN  L C  Q PF+
Sbjct:  191 WPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVG---YGPN--LDCFGQAPFD 330          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.975e-28
Identity = 60/155 (38.71%), Postives = 90/155 (58.06%), Query Frame = 3
Query:   30 YCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            YC+   K  +PC  G  Y+GRG + + +NYNYG  G+A+  D+LN+P+ + ++AT++F+ A W WMTP +  +PS H    G W P+ +D  A RV G+G   N++ G   CG G D+ + + I  Y  Y D++GV     G N  L C  Q P+
Sbjct:  171 YCEP--KPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTP-QSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGV---SYGDN--LDCYNQRPY 317          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            +PC PG  Y GRG + +  NYNYG  G A+ VD+LN+P+ +  +  ++F+ A+W WMTP +  +PS HD  +G W P+  D  A R+ GFG   N++ G   CG+G D  + + I  Y  Y  ++GV      P + L C  Q  F
Sbjct:  180 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTP-QSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGV-----TPGDNLDCVNQRWF 319          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 64/163 (39.26%), Postives = 89/163 (54.60%), Query Frame = 3
Query:    6 KEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            +E   +  YC    ++  PC PG  Y+GRG + L  NYNYG  G A+ VD+L +P+ +  +AT+ F+ A+W WMT  +  +PS+H    G W P+  D  A RV GFG   N++ G   CG G D  + + I  Y  Y D++GVG    G N  L C  Q PF
Sbjct:  111 QERGASSDYCTPSAQW--PCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMT-AQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVG---YGNN--LDCYSQRPF 265          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.157e-27
Identity = 64/163 (39.26%), Postives = 88/163 (53.99%), Query Frame = 3
Query:    6 KEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            +E      YC    ++  PC PG SY+GRG + L  NYNYG  G A+ VD+L +P+ +  + T++F+ AMW WMT  +  +PS+H    G W P+  D  A RV GFG   N++ G   CG G D  + + I  Y  Y D++ VG    G N  L C  Q PF
Sbjct:  166 QERGATSNYCTPSAQW--PCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMT-AQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVG---YGNN--LDCYNQRPF 320          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.157e-27
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPFN 497
            +PC  G  Y+GRG + + +NYNYG  G+A+  ++L++P+ + ++AT++F+ A W WMTP +  +PS H    G W P  ND  A RV G+G   N++ G   CG G D  + + I  Y  Y D++GV     G N  L C  Q PFN
Sbjct:  182 WPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTP-QSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGV---SYGAN--LDCYNQRPFN 322          
The following BLAST results are available for this feature:
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_SOLTU3.595e-2939.73Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC1.046e-2837.41Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI1_HORVU1.366e-2839.8826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI7_ORYSJ1.784e-2841.50Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.784e-2841.50Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI3_ORYSJ3.975e-2838.71Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_SOLTU6.780e-2838.36Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_HORVU8.855e-2839.2626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIA_SECCE1.157e-2739.26Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_ORYSJ1.157e-2739.46Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00097 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00097 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623006 ID=BQ623006; Name=BQ623006; organism=Citrus sinensis; type=EST; length=664bp
ACAACAAGGAGATGAGTCCTAACCAGATATACTGTGATGATGACTTCAAA
TACACATATCCTTGCACTCCTGGAGTTTCATATCATGGCCGCGGTGCCTT
GCCCCTCTACTGGAACTACAACTATGGGGAAACAGGAGAAGCCCTAAAAG
TTGATATATTGAACCACCCAGAGTACATAGAAAACAATGCGACCCTAGCC
TTTCAGGCAGCAATGTGGAGGTGGATGACTCCAGTGAAGAAGCATCAGCC
GTCGGCGCACGACGCGTTCGTTGGTAACTGGAAGCCTACCAAGAATGACA
CATTGGCCAAAAGGGTGCATGGATTTGGCACCACCATGAATGTTCTTTAT
GGTGACCAAGTTTGTGGCAAGGGTGATGACGAGTCAATGAACAACATGAT
CTCACATTATCTGTACTATCTTGATTTGATGGGCGTTGGCCGTGAGGAAG
CAGGTCCGAATGAAGTGCTCAGCTGCGGCGAGCAGGAGCCGTTCAATCCA
TCATCTCCTTCATCATCATCGTCATCCTCTTCGTTATCTTCTTGAGTGAT
TCCTTTTTTGAGATAATGCATTATATAATATACATATATAGTGAATGAAA
AATATTAACATCAAGTTTGATGTTGGGTGATCATCATGCTTGACTGCTAT
ATGTGTTATTGCAT
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