BQ623006

Overview
NameBQ623006
Unique NameBQ623006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   81 YHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKG-DDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            Y+GRG + L   YNY   G+AL +D++N+P+ + ++  +AF+ A+W WMT  +  +PS HD     W P+ +D  + R+ G+G   N++ G + CGKG   ++  + + +Y  Y D+  VG    G N  ++C +Q+P+
Sbjct:  121 YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMT-AQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVG---YGDN--IACRDQKPY 253          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.336e-20
Identity = 47/141 (33.33%), Postives = 76/141 (53.90%), Query Frame = 3
Query:   72 GVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            G  ++GRG + L    NY   G+A+  D++N+P+ +  +AT++F+ A+W WMT  + ++PS HD   G W P+  D  A R  G+G   N++ G   CGKG +  + + I  Y  Y  ++ V      P + L C +Q  F
Sbjct:  110 GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMT-AQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNV-----APGDNLDCYDQRNF 244          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-19
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   30 YCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSC 476
            YCD++ +  YPC PG  Y GRG + L WNYNYG  G++L +++L  PE + +N T+AF+  +W WM  V               +P  N        GFG T+  + G + C  G+  ++N  I +Y  Y   +GV   + GPN  LSC
Sbjct:  149 YCDENNRQ-YPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSV---------------RPVLN-------QGFGATIRAINGME-CNGGNSGAVNARIRYYRDYCGQLGV---DPGPN--LSC 268          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  108 YWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMN-NMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            + NYNYG  G+ L + +L  PE +E +  +AF+ A+W WMTP +  +PS H     +W P+  D+ A RV G+G   N++ G   CG+G   + N N I  Y  Y D +G      G N  L C +Q PF
Sbjct:  169 HMNYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTP-QSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGT---TYGSN--LDCYQQRPF 292          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   81 YHGRGALPLYWNYNYGETGEALKV--DILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            Y+GRG + L    NY   G+ + V  +++N+P+ +  +  ++F+ A+W WMT  + ++PS H+  +G W P+  DT A RV G+G   N++ G   CG G + +  + I  Y  Y  ++ V        E L C  Q+ F
Sbjct:  117 YYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTE-QDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNV-----PTGENLDCNNQKNF 250          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   81 YHGRGALPLYWNYNYGETGEALKV--DILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            Y+GRG + L    NY   G+ + V  D++N+P+ +  +  ++F+ A+W WMT  + ++PS H+  +G W P+  DT A RV G+G   N++ G   C  G + ++ + I  Y  Y  ++ V        E L C  Q+ F
Sbjct:  117 YYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMT-AQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNV-----PTGENLDCNNQKNF 250          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 51/156 (32.69%), Postives = 70/156 (44.87%), Query Frame = 3
Query:    9 EMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSC 476
            E++ +  YCD   K  +PC  G  Y+GRG L + WNYNYG  G A+  D L  P  +  +A +AF+AA+W WM  V    P                       GFG T   +     CG  +   MN  + +Y  Y   +GV   + GPN  L+C
Sbjct:  142 EINKSNAYCDPT-KRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVP----------------------QGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGV---DPGPN--LTC 269          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 51/149 (34.23%), Postives = 65/149 (43.62%), Query Frame = 3
Query:   30 YCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSC 476
            YCD D    YPC  G  Y+GRG L L WNYNY   G+A+  D L +PE +  +   +F+AAMW WMT V           V N              GFG T   + G   C   + +  N+ I  Y  Y    GV      P + L+C
Sbjct:  167 YCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHS---------VMN-------------QGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGV-----APGDNLTC 288          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 47/153 (30.72%), Postives = 72/153 (47.06%), Query Frame = 3
Query:   18 PNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSC 476
            P++ YCD+     +PC  G  Y+GRG L + WN+NYG  G+++  D L  P+ +  +  LAFQ A+W W   V       HDAFV                GFG T+  + G   C   +  +++N +++Y  +    GV      P   L+C
Sbjct:  145 PSKNYCDET-STQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNV-------HDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGV-----DPGSNLTC 271          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.262e-15
Identity = 42/136 (30.88%), Postives = 63/136 (46.32%), Query Frame = 3
Query:   30 YCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGV 437
            YCD++    YPC+    YHGRG + L WN+NYG  G A   D L  PE + N+  ++F+ A+W WM  V               +P  N        GFG T+  + G   C   +  ++   +++Y  Y   +GV
Sbjct:  149 YCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHV---------------RPVIN-------QGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGV 262          
The following BLAST results are available for this feature:
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI11_ORYSJ1.048e-2033.81Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC2.336e-2033.33Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI4_BRANA5.753e-1935.57Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_POPTR4.870e-1837.69Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIA_SOLLC1.085e-1731.43Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI1.417e-1731.43Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIB_MAIZE2.046e-1632.69Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU2.672e-1634.23Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI6_ORYSJ2.672e-1630.72Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU2.262e-1530.88Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00097 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00097 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623006 ID=BQ623006; Name=BQ623006; organism=Citrus sinensis; type=EST; length=664bp
ACAACAAGGAGATGAGTCCTAACCAGATATACTGTGATGATGACTTCAAA
TACACATATCCTTGCACTCCTGGAGTTTCATATCATGGCCGCGGTGCCTT
GCCCCTCTACTGGAACTACAACTATGGGGAAACAGGAGAAGCCCTAAAAG
TTGATATATTGAACCACCCAGAGTACATAGAAAACAATGCGACCCTAGCC
TTTCAGGCAGCAATGTGGAGGTGGATGACTCCAGTGAAGAAGCATCAGCC
GTCGGCGCACGACGCGTTCGTTGGTAACTGGAAGCCTACCAAGAATGACA
CATTGGCCAAAAGGGTGCATGGATTTGGCACCACCATGAATGTTCTTTAT
GGTGACCAAGTTTGTGGCAAGGGTGATGACGAGTCAATGAACAACATGAT
CTCACATTATCTGTACTATCTTGATTTGATGGGCGTTGGCCGTGAGGAAG
CAGGTCCGAATGAAGTGCTCAGCTGCGGCGAGCAGGAGCCGTTCAATCCA
TCATCTCCTTCATCATCATCGTCATCCTCTTCGTTATCTTCTTGAGTGAT
TCCTTTTTTGAGATAATGCATTATATAATATACATATATAGTGAATGAAA
AATATTAACATCAAGTTTGATGTTGGGTGATCATCATGCTTGACTGCTAT
ATGTGTTATTGCAT
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