BQ623006

Overview
NameBQ623006
Unique NameBQ623006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.915e-14
Identity = 43/136 (31.62%), Postives = 65/136 (47.79%), Query Frame = 3
Query:   30 YCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGV 437
            YCD + K  +PC PG  Y+GRG L + WNYNYG  G+ +  D L  P+ +  + T++F+ A+W WM  V  HQ                      + GFG T+  + G   C   +  ++N  +++Y  Y    GV
Sbjct:  168 YCDKNNKQ-WPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNV--HQ--------------------VMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGV 280          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 44/145 (30.34%), Postives = 67/145 (46.21%), Query Frame = 3
Query:    3 NKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGV 437
            N+    N  YCD   K  +PC PG  Y+GRG L + WN+NYG  G+ +  D L  P+ +  + T++F+ A+W WM  V  HQ  +                     GFG T+  + G   C   +  ++N  +++Y  Y    GV
Sbjct:  156 NEINGANMDYCDKSNKQ-WPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNV--HQVMS--------------------QGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGV 277          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 44/151 (29.14%), Postives = 65/151 (43.05%), Query Frame = 3
Query:    9 EMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPN 461
            E++ +  YCD   +  +PC  G  Y+GRG L + WNYNYG  G  +  + L  P  +  +A +AF+ A+W WM  V    P                       GFG T+  + G   C   +   MN  + +Y  Y   +   R + GPN
Sbjct:  153 EINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMP----------------------QGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQL---RVDPGPN 277          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 37/136 (27.21%), Postives = 61/136 (44.85%), Query Frame = 3
Query:   30 YCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGV 437
            YC +  +Y  PC P   Y GRG + L WNYNY + G+ L  D LN P+ +  +  ++F+ ++W W+    ++                   +     GFG T+ ++ G Q C   +   M   + +Y  Y   +GV
Sbjct:  127 YCQESQQY--PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQY------------------VILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGV 242          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 37/127 (29.13%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGV 437
            +PC  G  Y  RG + L  N+NYG  G+A+  D++ +P+ +E +  ++F+ A+W WM+    ++PS HD  +        ++ A R+   G   N++   +  G  D    ++ I  Y  Y D++GV
Sbjct:  228 WPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQ-HDNKPSCHDIVL------NANSAANRIPNKGVIGNII--SRAFGHDDFAVRSSSIGFYKRYCDMLGV 345          
The following BLAST results are available for this feature:
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI5_ORYSJ1.915e-1431.62Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ3.267e-1430.34Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE4.267e-1429.14Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIT_DIOJA5.216e-1227.21Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
AGI_URTDI5.216e-1229.13Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00097 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00097 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623006 ID=BQ623006; Name=BQ623006; organism=Citrus sinensis; type=EST; length=664bp
ACAACAAGGAGATGAGTCCTAACCAGATATACTGTGATGATGACTTCAAA
TACACATATCCTTGCACTCCTGGAGTTTCATATCATGGCCGCGGTGCCTT
GCCCCTCTACTGGAACTACAACTATGGGGAAACAGGAGAAGCCCTAAAAG
TTGATATATTGAACCACCCAGAGTACATAGAAAACAATGCGACCCTAGCC
TTTCAGGCAGCAATGTGGAGGTGGATGACTCCAGTGAAGAAGCATCAGCC
GTCGGCGCACGACGCGTTCGTTGGTAACTGGAAGCCTACCAAGAATGACA
CATTGGCCAAAAGGGTGCATGGATTTGGCACCACCATGAATGTTCTTTAT
GGTGACCAAGTTTGTGGCAAGGGTGATGACGAGTCAATGAACAACATGAT
CTCACATTATCTGTACTATCTTGATTTGATGGGCGTTGGCCGTGAGGAAG
CAGGTCCGAATGAAGTGCTCAGCTGCGGCGAGCAGGAGCCGTTCAATCCA
TCATCTCCTTCATCATCATCGTCATCCTCTTCGTTATCTTCTTGAGTGAT
TCCTTTTTTGAGATAATGCATTATATAATATACATATATAGTGAATGAAA
AATATTAACATCAAGTTTGATGTTGGGTGATCATCATGCTTGACTGCTAT
ATGTGTTATTGCAT
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