BQ623013

Overview
NameBQ623013
Unique NameBQ623013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7350 contig Csv1_Contig7350:313..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: PRDX2_MACFA (Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 4.414e-12
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   41 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            + V LS +KGK VV++FYP D T  C  +  AF +  E F+K G EV+G+S D   +H A+    R       L   LL+D   ++ +++GV     G +  R  +++D  GV++ I  N     + +DE L+ +
Sbjct:   26 KEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEG-IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLV 159          
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: PRDX2_HUMAN (Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5)

HSP 1 Score: 70.4774 bits (171), Expect = 4.414e-12
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   41 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            + V LS +KGK VV++FYP D T  C  +  AF +  E F+K G EV+G+S D   +H A+    R       L   LL+D   ++ +++GV     G +  R  +++D  GV++ I  N     + +DE L+ +
Sbjct:   26 KEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEG-IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLV 159          
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: PRDX1_DROME (Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   41 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            +++ LS +KGK +V++FYP D T  C  +  AF +S  +F+K   EVIG S D   +H A+    R       +   LL+D+  KV +++GV  +  G +P R  +++D    ++ I  N     + ++ETL+ +
Sbjct:   22 KDIKLSDYKGKYLVLFFYPLDFTFVCPTEIIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLADKSMKVARDYGVLDEETG-IPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLV 155          
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 44/142 (30.99%), Postives = 74/142 (52.11%), Query Frame = 2
Query:   23 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            + D + +++SL+ +KGK VV +FYP D T  C  +  AF D  E+FKK   +VIG S D    H A+    +       +   L+SD    + +++GV  AD    +  R  +++D  G+++ I  N     + +DETL+ +
Sbjct:   21 MPDGQFKDISLADYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKAD--EGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLV 160          
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: PRDX3_RAT (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Rattus norvegicus GN=Prdx3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 42/137 (30.66%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   35 EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            E + +SL  FKGK +V++FYP D T  C  +  AF D   +F     EV+ +S D   SH A+    R       +  TLLSD   ++ +++GV  +  G +  R  +++D NGV++ +  N     + ++E L+ +
Sbjct:   82 EFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDLTKQISRDYGVLLESAG-IALRGLFIIDPNGVIKHLSVNDLPVGRSVEEPLRLV 217          
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: TDXH_AQUAE (Probable peroxiredoxin OS=Aquifex aeolicus GN=aq_858 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 42/146 (28.77%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   11 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR------LPYTLLSDEGNKVRKEWGV--PADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            P+F  +   G       FKG+ VV++ +PAD TP CT +  AF  +YE+FKK   ++IG+S D + SH A+    +      +P+ +++D   +V K++G+  PA    +   R  +V+D  G+++ +        ++I E ++ +
Sbjct:   14 PAFEAQTTFGPVKFPDDFKGQWVVLFSHPADFTPVCTTEFVAFAKNYEEFKKRNVQLIGLSVDSNFSHIAWVMNIKEKFGIEIPFPIIADHNMEVAKKYGMIHPAQ-STTFTVRALFVIDDKGILRAMIYYPLTTGRNIREVIRLV 158          
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: PRDX2_PONAB (Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = 2
Query:   41 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            + V LS +KGK VV++FYP D T  C  +  AF +  E F K G EV+G+S D   +H A+    R       L   LL+D   ++ +++GV     G +  R  +++D  GV++ I  N     + +DE L+ +
Sbjct:   26 KEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFHKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEG-IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLV 159          
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: PRDX2_BOVIN (Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 2
Query:   41 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            + V LS +KGK VV++FYP D T  C  +  AF D   +F K   EV+G+S D   +H A+    R       L   LL+D   K+  ++GV  +  G +  R  +V+D  GV++ +  N     + +DE L+ +
Sbjct:   27 KEVKLSDYKGKYVVLFFYPLDFTFVCPTEIVAFSDRAAEFHKLNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEG-IAYRGLFVIDGKGVLRQVTINDLPVGRSVDEALRLV 160          
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: PRDX1_RAT (Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 47/150 (31.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:   11 PSF----TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            PSF     + D + +++SLS +KGK VV +FYP D T  C  +  AF D  E+FKK   +VIG S D    H A+    +       +   L+SD    + +++GV  AD    +  R  +++D  G+++ I  N     + +DE L+ +
Sbjct:   13 PSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKAD--EGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLV 160          
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Match: PRDX2_CRIGR (Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.284e-11
Identity = 46/148 (31.08%), Postives = 74/148 (50.00%), Query Frame = 2
Query:   11 PSFT---LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 424
            P FT   + D   + V LS ++GK VV++FYP D T  C  +  AF +  E F+K G EV+G+S D   +H A+    R       L   LL+D    + + +GV     G +  R  +++D  G+++ I  N     + +DE L+ +
Sbjct:   13 PDFTATAVVDGAFKEVKLSDYRGKYVVLFFYPLDFTFVCPTEIIAFSNHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRSLSENYGVLKTDEG-IAYRGLFIIDAKGILRQITVNDLPVGRSVDEALRLV 159          
The following BLAST results are available for this feature:
BLAST of BQ623013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PRDX2_MACFA4.414e-1232.59Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE... [more]
PRDX2_HUMAN4.414e-1232.59Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5[more]
PRDX1_DROME5.765e-1231.11Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafr... [more]
PRDX1_BOVIN5.765e-1230.99Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]
PRDX3_RAT7.529e-1230.66Thioredoxin-dependent peroxide reductase, mitochon... [more]
TDXH_AQUAE9.833e-1228.77Probable peroxiredoxin OS=Aquifex aeolicus GN=aq_8... [more]
PRDX2_PONAB9.833e-1232.59Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3[more]
PRDX2_BOVIN9.833e-1232.59Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1[more]
PRDX1_RAT9.833e-1231.33Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1... [more]
PRDX2_CRIGR1.284e-1131.08Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00104 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00104 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623013 ID=BQ623013; Name=BQ623013; organism=Citrus sinensis; type=EST; length=482bp
ACAGGCGCCTCCTTCCTTCACATTGAAAGATCAAGAGGGCAGGAATGTGA
GCCTATCCAAGTTTAAAGGGAAGCCCGTGGTTGTTTATTTTTACCCTGCT
GATGAGACACCTGGCTGCACCAAACAGGCATGCGCTTTTAGGGATTCTTA
TGAGAAATTTAAGAAAGCAGGAGCTGAGGTTATTGGGATTAGTGGTGATG
ATTCATCGTCACACAAGGCATTTGCAAAAAAGTATAGGCTTCCATATACA
TTGCTGAGCGACGAGGGTAACAAGGTGAGGAAAGAATGGGGGGTTCCAGC
AGACTTCTTTGGATCATTGCCTGGGAGACAGACTTACGTTCTTGACAAGA
ATGGAGTGGTTCAGCTCATCTACAACAACCAGTTCCAACCTGAAAAACAC
ATTGATGAGACCTTGAAGTTTCTTCCAAGTAGTTGAACATCTCAATGTAT
TGCCTTGTTCATGCTTGATTACAAATCCTCTG
back to top