BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_DEIDV (60 kDa chaperonin OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 115/212 (54.25%), Postives = 148/212 (69.81%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A+DKVG +GV+                GM+ D+G+I+P FVTNPEK+    E+A +L+ ++KIS +KD++P+LEK  Q   PLLIIAEDV GEALATLVVNKLRG LN+AA+KAPGFG+RRK +L+DIA VTG E  + DLG  +ENT +E LG A ++ I KD TTI+     + +I AR+  +K EL  TDS Y  EKL ER+AKLSGGV
Sbjct:  163 AMDKVGKEGVITIEESKGFDTEVDVVEGMQFDKGFINPYFVTNPEKMEAVLEDAYILINEKKISNLKDLLPVLEKVAQTGRPLLIIAEDVEGEALATLVVNKLRGTLNIAAVKAPGFGDRRKEMLRDIAAVTGGEVVSEDLGHKLENTGMEMLGRAARIRITKDETTIVDGKGEQAQIDARVNAIKGELDTTDSDYAREKLQERLAKLSGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH604_RHIME (60 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 110/213 (51.64%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTNPEK++ + E+A +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG    + DLG+ +E+ +++ LG A+KV+I K++TTI+  A  K +I+ R+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAFILLHEKKLSNLQAMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 110/213 (51.64%), Postives = 155/213 (72.77%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTN +K++ + E+A +L+ ++K+S ++ ++P+LE   Q   PLLII+EDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG +  + DLG+ +EN  +  LG A+KV+I K++TTI+  A  K EIQ R+AQ+K+++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTSKPLLIISEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLENVGLNMLGRAKKVSISKENTTIVDGAGKKAEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_SYNAS (60 kDa chaperonin 2 OS=Syntrophus aciditrophicus (strain SB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 110/213 (51.64%), Postives = 154/213 (72.30%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTNPEK+ V  E+A +L+ ++KIS +KD++P+LE+  ++  PLLIIAED+ GEALATLVVNK+RG L+VAA+KAPGFG+RRKA+L+DIAI+TG    + D+G  +ENT +E LG A+++ I KD+TTII  A  +  ++ R+ Q++ ++ ET S YD EKL ER+AKL GGV
Sbjct:  164 EAMGKVGKEGVITVEEAKGLETELEIVEGMQFDRGYLSPYFVTNPEKMEVSLEDALILIYEKKISGMKDLLPILEQIAKMGRPLLIIAEDIEGEALATLVVNKIRGTLHVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDMGYKLENTRLEDLGRAKRIQIDKDNTTIIDGAGERAALEGRVKQIRAQIDETTSDYDREKLQERLAKLVGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 110/213 (51.64%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTNPEK++ + E+A +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG    + DLG+ +E+ +++ LG A+KV+I K++TTI+  A  K +I+ R+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAFILLHEKKLSNLQAMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_PROM1 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL1A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 117/213 (54.93%), Postives = 147/213 (69.01%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DAIDKV  DGV+                GM  DRGY SP FVT+ ++LI EFEN  +L+TD+KIS+I D+IP+LE   +   PL+I+AE+V GEALATLVVNK RG+L VAA++AP FGERRKA L DIA++TG    + D  + +E   +  LG AR+VTI KDSTTI+A+     E+  RIA +K+EL ETDS YD EKL ERIAKL+GGV
Sbjct:  162 DAIDKVSFDGVITVEESKSLATELDITEGMAFDRGYSSPYFVTDEDRLICEFENPSILITDKKISSIADLIPVLETVQKNGTPLIILAEEVEGEALATLVVNKNRGVLQVAAVRAPSFGERRKAALGDIAVLTGGTLISEDKAMSLEKVQISDLGQARRVTITKDSTTIVANDNQNTELSNRIASIKRELDETDSEYDQEKLNERIAKLAGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 109/213 (51.17%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM  D+GYISP F T+PE++   F+   +L+TD+KI+ ++D++P+LE+  +   PL+IIAED+  EALATLVVN+LRG+LNVAA+KAPGFG+RRKA+L+DIAI+TG +    D GL +ENT +E LG AR++TI KDSTTI+A+  +   ++ R+ Q+++++ ET+S YD EKL ER+AKLSGGV
Sbjct:  163 EAMDKVGKEGVISLEEGKSVTTELEITEGMRFDKGYISPYFATDPERMEAIFDEPFLLLTDKKIALVQDLVPVLEQVARAGRPLVIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKAMLEDIAILTGGQLITEDAGLKLENTKLESLGKARRITITKDSTTIVAE-GNDVAVKGRVEQIRRQMEETESSYDKEKLQERLAKLSGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 109/213 (51.17%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM  D+GYISP F T+PE++   F+   +L+TD+KI+ ++D++P+LE+  +   PL+IIAED+  EALATLVVN+LRG+LNVAA+KAPGFG+RRKA+L+DIAI+TG +    D GL +ENT +E LG AR++TI KDSTTI+A+  +   ++ R+ Q+++++ ET+S YD EKL ER+AKLSGGV
Sbjct:  163 EAMDKVGKEGVISLEEGKSVTTELEITEGMRFDKGYISPYFATDPERMEAIFDEPFLLLTDKKIALVQDLVPVLEQVARAGRPLVIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKAMLEDIAILTGGQLITEDAGLKLENTKLESLGKARRITITKDSTTIVAE-GNDVAVKGRVEQIRRQMEETESSYDKEKLQERLAKLSGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 111/213 (52.11%), Postives = 153/213 (71.83%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP F+TNPEK+ VE  +  +L+ ++K+S ++ I+P+LE   Q   PLLIIAED+ GEALATLVVNKLRG L VAA+KAPGFG+RRKA+L+DIAI+T  E  + DLG+ +EN ++  LGTA++VTI KD+TTI+  A + D I+ R+  ++K++  T S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKEGVITVEEAKGLEFELDVVEGMQFDRGYLSPYFITNPEKMQVELTDPYILIHEKKLSNLQSILPILEAVVQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTNGELISEDLGIKLENVTIGMLGTAKRVTIDKDNTTIVDGAGAADAIKGRVEAIRKQIEITTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 111/213 (52.11%), Postives = 151/213 (70.89%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA +KVG DGV+                GM+ DRGY+SP FVTNP+ +    E+A +L+ D+KISA+KD++P+LEK  Q   PLLIIAEDV GEALATLVVNKLRG+L VAA+KAPGFG+RRKA+L+DIAI+TG    + + G  +EN +++ LG A ++ + KD+TTI+       +I+AR  Q+++++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAFEKVGKDGVITVEEAKGTETTLEVVEGMQFDRGYLSPYFVTNPDTMEAVLEDAYILIHDKKISAMKDLLPILEKVVQTGRPLLIIAEDVEGEALATLVVNKLRGVLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYRLENATLDYLGQAERIIVDKDNTTIVGGKGDPAQIKARANQIRQQIEETTSDYDREKLQERLAKLAGGV 376          
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DEIDV2.265e-5754.2560 kDa chaperonin OS=Deinococcus deserti (strain V... [more]
CH604_RHIME2.265e-5751.6460 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4... [more]
CH604_RHILO2.265e-5751.6460 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]
CH602_SYNAS2.265e-5751.6460 kDa chaperonin 2 OS=Syntrophus aciditrophicus (... [more]
CH601_RHIME2.265e-5751.6460 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1... [more]
CH601_PROM12.265e-5754.9360 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_ANAVT2.265e-5751.1760 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH601_ANASP2.265e-5751.1760 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]
CH60_SPHWW2.958e-5752.1160 kDa chaperonin OS=Sphingomonas wittichii (strai... [more]
CH60_RHOMR2.958e-5752.1160 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
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