BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623016_ssr48 microsatellite BQ623016_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:790..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 112/213 (52.58%), Postives = 153/213 (71.83%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+S   VT+ +K+  + +N  +L+TD+KIS I+DI+PLL++  Q    LLIIA+DV GEAL TLV+NK+RG  NV A+KAPGFG+RRKA+L+DIAI+TG    + DLGL +++T ++QLG A KVT+ KDSTTI+  A SKD I  R+ Q+KK++A+T S +D EKL ER+AKL+GGV
Sbjct:  162 DAMEKVGHDGVITIEESKGIDTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQEIVQQGKSLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVISSDLGLELKDTKIDQLGKAGKVTVTKDSTTIVEGAGSKDAISERVDQIKKQIADTTSDFDREKLQERLAKLAGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_GEOSM (60 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 107/213 (50.23%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG +GV+                GM+ DRGY+SP FVT+PE++    +N  +L+ D+KI+ +KD++P+LE+T +   PLLIIAED+ GEALATLVVNKLRG+LNV A+KAPGFG+RRKA+L+DIAI+TG +  + ++G  +ENT+++ LG A+K+T+ KD+TTII    ++ +IQ R+  ++ ++ ET S YD EKL ER+AKL GGV
Sbjct:  164 EAMEKVGKEGVITVEEAKAMETTLETVEGMQFDRGYLSPYFVTDPERMEAAMDNVAILIHDKKIANMKDLLPVLEQTAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNVCAVKAPGFGDRRKAMLEDIAILTGGKVISEEVGFKLENTTLDMLGQAKKITVDKDNTTIIDGFGAEADIQGRVKMIRAQIDETSSDYDREKLQERLAKLVGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_GEOBB (60 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 107/213 (50.23%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG +GV+                GM+ DRGY+SP FVT+PE++    +N  +L+ D+KI+ +KD++P+LE+T +   PLLIIAED+ GEALATLVVNKLRG+LNV A+KAPGFG+RRKA+L+DIAI+TG +  + ++G  +ENT+++ LG A+K+T+ KD+TTII    ++ +IQ R+  ++ ++ ET S YD EKL ER+AKL GGV
Sbjct:  164 EAMEKVGKEGVITVEEAKAMETTLETVEGMQFDRGYLSPYFVTDPERMEAAMDNVAILIHDKKIANMKDLLPVLEQTAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNVCAVKAPGFGDRRKAMLEDIAILTGGKVISEEVGFKLENTTLDMLGQAKKITVDKDNTTIIDGYGAEADIQGRVKMIRAQIDETSSDYDREKLQERLAKLVGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_DESVM (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 109/213 (51.17%), Postives = 154/213 (72.30%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVT+PEK+I E +   +L  ++KIS++KD++P+LE+  ++  PL+IIAEDV GEALATLVVNKLRG L V A+KAPGFG+RRKA+LQDIA++TG    + D+G+ +EN SV  LGTA++V + K++TTI+  A   ++I+AR+ Q++ ++ ET S YD EKL ER+AKL GGV
Sbjct:  164 EAMAKVGKEGVITVEEAKGLETTLEVVEGMQFDRGYLSPYFVTDPEKMICELDEPFILCNEKKISSMKDMLPVLEQVAKMNRPLVIIAEDVEGEALATLVVNKLRGTLQVVAVKAPGFGDRRKAMLQDIAVLTGGTVVSEDMGVKLENISVADLGTAKRVVVDKENTTIVDGAGKSEDIKARVKQIRAQIDETTSDYDREKLQERLAKLVGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_BRUME (60 kDa chaperonin OS=Brucella melitensis GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 110/213 (51.64%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTNPEK++ + E+A +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+ RKA+L+DIAI+TG +  + DLG+ +E+ +++ LG A+KV+I K++TTI+  A  K EI AR+ Q+K+++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDCRKAMLEDIAILTGGQVISEDLGIKLESVTLDMLGRAKKVSISKENTTIVDGAGQKAEIDARVGQIKQQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_NITHX (60 kDa chaperonin 2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL2 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 111/213 (52.11%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ +VG +GV+                GM+ DRGYISP FVTN +K+ VE ++A +L+ ++K+S++ +++PLLE   Q   PL+I+AEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN ++  LG A+KV I K++TTI+  A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 NAMKRVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLAMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_RHISN (60 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR234) GN=groL1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 111/213 (52.11%), Postives = 153/213 (71.83%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG +GV+                GM+ DRGY+SP FVTNP+K+ VE E   +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALAT VVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG    + DLG+ +EN ++  LG A+KV + K++TTI+  A SK EIQ R+AQ++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAVEKVGNEGVITVEEAKTAVTELEVVEGMQFDRGYLSPYFVTNPDKMRVELEEPYLLIHEKKLSNLQALLPVLESVVQSGKPLLIIAEDVEGEALATPVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTAISEDLGIKLENVTLNMLGRAKKVVVEKENTTIVDGAGSKSEIQGRVAQIRAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.958e-57
Identity = 112/212 (52.83%), Postives = 155/212 (73.11%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A++ VG +GV+                GM+ DRGY+SP  VT+ E++   F+   +L+TD+KIS I D++P+LEK  +   PL+IIAED+  EALATLVVNKLRG+LNVAA+KAPGFG+RRKA+LQDIA++T  E  + D G+ +EN + +QLG ARK+TI KD+TTI+A+  ++  ++AR AQ+K+++ ETDS YD EKL ER+AKLSGGV
Sbjct:  164 AMETVGKEGVITVEESKSLTTELEVTEGMQFDRGYVSPYLVTDQERMEAVFDEPFLLITDKKISIITDLVPILEKVARAGRPLVIIAEDIEKEALATLVVNKLRGVLNVAAVKAPGFGDRRKAMLQDIAVLTDGEVISEDTGIKLENVTTDQLGKARKMTITKDNTTIVAE-GNEAAVKARCAQIKQQIEETDSEYDREKLQERLAKLSGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.863e-57
Identity = 110/213 (51.64%), Postives = 152/213 (71.36%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG DGV+                GM+ DRGY+SP FVTN +K+    EN  +L+TD+KI+++KDI+PLLE T +   PLLI+AED+ GEAL TLVVNKLRG+LNVAA+KAPGFG+RRK +L+DIA +TG    + ++G  +E+ ++  LG A +V I KD++TI+    SKDE+ AR+AQ++ ++  T S YD EKL ER+AKLSGGV
Sbjct:  164 EAMEKVGKDGVITVEEAKGINDELNVVEGMQFDRGYLSPYFVTNSDKMEAVLENPYILLTDKKITSMKDILPLLEGTMKSGRPLLIVAEDIEGEALTTLVVNKLRGVLNVAAVKAPGFGDRRKEMLKDIATLTGGSVISEEIGKTLESATIADLGQAARVVIDKDNSTIVDGKGSKDEVNARVAQIRTQIEATTSDYDREKLQERLAKLSGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.863e-57
Identity = 111/213 (52.11%), Postives = 149/213 (69.95%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP FVTN EK+    EN  +L+ ++K+  I++++P+LEK  Q   PLLIIAEDV GEALATLVVN ++G+L V A+KAPGFGERRKA+LQDIAI+TG      DLG+ +E+  ++ LG A KV + KD+TTII    + ++I+ARI Q+KK++  T S YD EKL ER+AKL+GGV
Sbjct:  164 DAMEKVGKDGVITVEESKSAETVLEVTEGMQFDRGYLSPYFVTNAEKMEAVLENPYILIYEKKVGNIRELLPVLEKVVQTNKPLLIIAEDVEGEALATLVVNHIKGVLRVCAVKAPGFGERRKAMLQDIAILTGGTAITEDLGIKLESVDLDMLGKADKVVVDKDNTTIIGGKGNPEDIKARIEQIKKQIETTTSEYDKEKLQERLAKLAGGV 376          
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LACGA2.958e-5752.5860 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_GEOSM2.958e-5750.2360 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH60_GEOBB2.958e-5750.2360 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH60_DESVM2.958e-5751.1760 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_BRUME2.958e-5751.6460 kDa chaperonin OS=Brucella melitensis GN=groL P... [more]
CH602_NITHX2.958e-5752.1160 kDa chaperonin 2 OS=Nitrobacter hamburgensis (s... [more]
CH601_RHISN2.958e-5752.1160 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR23... [more]
CH601_GLOVI2.958e-5752.8360 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_WOLSU3.863e-5751.6460 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH60_SULSY3.863e-5752.1160 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
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