BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_RHOPB (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL2 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.045e-57
Identity = 110/212 (51.89%), Postives = 154/212 (72.64%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A+ KVG +GV+                GM+ DRGY+SP FVTN EK+ VEF++A VL+ ++K+S ++ ++PLLE   Q   PL+IIAEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+L+D+AI+TG +  + DLG+ +EN +++ LG A+K+ I K++TTI+  A  K +I+ R+ Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  165 AMQKVGNEGVITVEENKSLTTEVDIVEGMKFDRGYLSPYFVTNAEKMAVEFDDAYVLLHEKKVSGLQSMLPLLEAVVQSGKPLVIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDLAILTGGQLISDDLGMKLENVTLKMLGRAKKLVIDKENTTIVGGAGKKADIETRVGQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.045e-57
Identity = 109/213 (51.17%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTNPEK+I + E+  +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG    + DLG+ +E+ +++ LG A+KV+I K++TTI+  + +K +I+ R+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMIADLEDVFILLHEKKLSNLQSMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSISKENTTIVDGSGAKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CHLP8 (60 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.589e-57
Identity = 112/213 (52.58%), Postives = 152/213 (71.36%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG DGV+                GM+ DRGY+SP FVTNPE +  E E A +L+ D+KIS +K+++P+LEK+ Q   PLLIIAED+ GEALAT+VVNKLRG L VAA+KAPGFG+RRKA+L+DIAI+TG    + + G  +EN ++  LG A +V I KD+TTI+     ++EI ARI ++K ++ ++ S YD+EKL ER+AKLSGGV
Sbjct:  164 EAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPETMEAELEEALILIYDKKISNMKELLPILEKSAQSGRPLLIIAEDIEGEALATIVVNKLRGTLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATMAYLGQASRVNIDKDNTTIVEGKGKQEEITARINEIKGQIEKSTSDYDTEKLQERLAKLSGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_BARBK (60 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.589e-57
Identity = 108/213 (50.70%), Postives = 155/213 (72.77%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG +GV+                GM+ DRGY+SP FVTN EK++V+ ++  +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIA++T  +  + D+G+ +EN ++E LG A+KV + K++TTI+  A  K EI AR++Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDPYILIHEKKLSNLQSLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAVLTSGQVISEDVGIKLENVTLEMLGRAKKVHVSKETTTIVDGAGQKSEINARVSQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_BARBA (60 kDa chaperonin OS=Bartonella bacilliformis GN=groL PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 6.589e-57
Identity = 108/213 (50.70%), Postives = 155/213 (72.77%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG +GV+                GM+ DRGY+SP FVTN EK++V+ ++  +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIA++T  +  + D+G+ +EN ++E LG A+KV + K++TTI+  A  K EI AR++Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDPYILIHEKKLSNLQSLLPVLEAVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAVLTSGQVISEDVGIKLENVTLEMLGRAKKVHVSKETTTIVDGAGQKSEINARVSQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.589e-57
Identity = 109/213 (51.17%), Postives = 154/213 (72.30%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KV  DGV+                GM+ DRGY+SP FVT+ ++ +VE++N  +L+TD+KI++I+D++P+LE   +   PLLIIAED+ GEALATLVVNK RG+LN  A+KAP FG+RRKA+LQDIA++TG +  + ++GL + + +   LG A+K+TI KD+T I+A   +K ++ ARIAQ+++ L ETDS YD EKL ERIAKL+GGV
Sbjct:  163 DAVAKVTKDGVITVEESKSLATELEVVEGMQFDRGYLSPYFVTDQDRQVVEYDNPLILLTDKKIASIQDLVPVLEDVARAGRPLLIIAEDIEGEALATLVVNKARGVLNTVAVKAPAFGDRRKAILQDIAVLTGGQVISEEVGLSLADANSSVLGKAQKITISKDTTIIVAGDENKADVAARIAQIRRSLEETDSDYDREKLQERIAKLAGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.589e-57
Identity = 110/213 (51.64%), Postives = 151/213 (70.89%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG DGV+                G++ DRGYISP FVTN EKLI + EN  +L+ ++K+S+++ ++PLLE   +   PLL IAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG E  + DLG+ +E+ ++ QLG AR++ I KD+TTI+      D I+ R+ Q++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAVQKVGKDGVITVEEAKGFETELDVVEGLQFDRGYISPYFVTNSEKLIADLENPYILIHEKKLSSLQPLLPLLENVVKSGRPLLSIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAILEDIAILTGGEVISEDLGIKLESVTLSQLGQARRIVIDKDNTTIVDGEGDADAIKGRVGQIRAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_SYNE7 (60 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groL PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 8.606e-57
Identity = 106/213 (49.77%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+DKVG +GV+                GM  D+GYISP F T+ E++   F+   +L+TD+KI  ++D++P+LE+  +   PL+IIAED+  EALATLVVN+LRG+LNVAA+KAPGFG+RRKA+L+DIA++TG +    D GL ++ T ++QLG AR++TI KD+TTI+A+  ++  ++AR+ Q+++++ ET+S YD EKL ER+AKLSGGV
Sbjct:  163 DAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFATDTERMEAVFDEPFILITDKKIGLVQDLVPVLEQVARAGRPLVIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKAMLEDIAVLTGGQLITEDAGLKLDTTKLDQLGKARRITITKDNTTIVAE-GNEAAVKARVDQIRRQIEETESSYDKEKLQERLAKLSGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_METSB (60 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.606e-57
Identity = 111/212 (52.36%), Postives = 155/212 (73.11%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A+ KVG +GV+                GM+ DRGY+SP F+TN EK+I E E+  +LV ++K+S+++ ++P+LE   Q   PL+IIAEDV GEALATLVVNKLRG L VAA+KAPGFG+RRKA+L+DIAI+T     + ++G+ +EN +++ LG A+++ I K+STTII  A +K EI+ARIAQ+K ++AET S YD EK+ ER+AKL+GGV
Sbjct:  165 AMQKVGNEGVITVEEAKSLETELDVVEGMQFDRGYLSPYFITNAEKMIAELEDPFILVHEKKLSSLQALLPVLEAVVQSGKPLVIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTSGTLISEEIGIKLENVTLQMLGRAKRIRIDKESTTIIDGAGAKGEIEARIAQIKSQIAETTSDYDREKMQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CHLPB (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.606e-57
Identity = 111/213 (52.11%), Postives = 150/213 (70.42%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP FVTN EK+  E E+  +L+ D+KIS +KD++P+LEKT Q   PL+II+ED+ GEALATLVVNKLRG L V A+KAPGFG+RRKA+L+DIAI+TG    + + G  +EN ++  LG A  VT+ KD+TTI+      D+I+ARI ++K ++  + S YD+EKL ER+AKLSGGV
Sbjct:  164 DAMEKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNSEKMDAELEDPYILIHDKKISNMKDLLPILEKTAQSGRPLMIISEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATISYLGQAATVTVDKDNTTIVEGKGQADDIKARINEIKNQIDASTSDYDTEKLQERLAKLSGGV 376          
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_RHOPB5.045e-5751.8960 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_RHIEC5.045e-5751.1760 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]
CH60_CHLP86.589e-5752.5860 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH60_BARBK6.589e-5750.7060 kDa chaperonin OS=Bartonella bacilliformis (str... [more]
CH60_BARBA6.589e-5750.7060 kDa chaperonin OS=Bartonella bacilliformis GN=g... [more]
CH602_SYNP66.589e-5751.1760 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH602_GLUDA6.589e-5751.6460 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
CH60_SYNE78.606e-5749.7760 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH60_METSB8.606e-5752.3660 kDa chaperonin OS=Methylocella silvestris (stra... [more]
CH60_CHLPB8.606e-5752.1160 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
back to top