BQ623016 | Citrus Genome Database

Overview


Name	BQ623016
Unique Name	BQ623016
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	641

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
BQ623016_ssr48	microsatellite	BQ623016_ssr48:48..59.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892	contig	Csv1_Contig892:790..1430.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.853e-59
Identity = 114/213 (53.52%), Postives = 153/213 (71.83%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG DGV+                GM+ DRGY+S   +T+PE++    E   +L+TD+KISA+ +I+P+LE+  Q   PL+IIAEDV GEALATLVVNKLRG+L   A+KAPGFG+RRKA+LQDIAI+TG +F + + G+ +EN +++ LG A KV   KD TTII    +K +I+ARIAQ+KK+L ETDS +D EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKDGVITVEESQGITTTLELVEGMQFDRGYLSAYMITDPERMEAVLEEPYILITDRKISAVSEILPILERVVQTGKPLVIIAEDVEGEALATLVVNKLRGVLQSLAVKAPGFGDRRKAMLQDIAILTGGQFISEETGIKLENVTLDMLGRAEKVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.853e-59
Identity = 114/213 (53.52%), Postives = 157/213 (73.71%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG DGV+                GM+ DRGY+SP F+TN EK+ VE  +  +L+ D+KI+ +KD++P+LE+  +   PLLI+AED+ GEALATLVVNKLRG+LN++A+KAPGFG+RRKA+L+DIAI+TG E  + +LG  +E+ S++ LG A +V I KD+TTI+  A  KD I+ARI Q+K ++AET S YD EKL ER+AKLSGGV
Sbjct:  163 EAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMQVELSSPFILLFDKKITNLKDLLPVLEQIQKTGKPLLIVAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRTLESASLQDLGQADRVVIDKDNTTIVNGAGDKDSIEARINQIKAQIAETTSDYDKEKLQERLAKLSGGV 375

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CAMC5 (60 kDa chaperonin OS=Campylobacter curvus (strain 525.92) GN=groL PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.420e-59
Identity = 115/213 (53.99%), Postives = 154/213 (72.30%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP F+TN EK+ VE  N  +L+ D+KI+ +KD++P+LE+  +   PLLI+AED+ GEALATLVVNKLRG+LN++A+KAPGFG+RRKA+L+DIAI+TG E  + +LG  +E+ ++E LG A  V I KD+TTI+  A  K  I ARI Q+K ++AET S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKSIEDELNVVEGMQFDRGYLSPYFITNAEKMQVELSNPFILLFDKKITNLKDLLPVLEQIQKTGKPLLIVAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRTLESATLEDLGQASSVVIDKDNTTIVNGAGEKSAIDARINQIKAQIAETTSDYDKEKLQERLAKLSGGV 375

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_RHOS5 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=groL PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.160e-59
Identity = 112/213 (52.58%), Postives = 157/213 (73.71%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGY+SP FVTN +K+  E E+  +L+ ++K+S+++ ++PLLE   Q + PLLI+AEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN +++ LG A+KV+I KD+TTI+  A  K EI+AR++Q++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMQKVGNEGVITVEENKGLETEVEVVEGMQFDRGYLSPYFVTNADKMTAELEDVFILLHEKKLSSLQPMVPLLESVIQAQRPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRTQIEETTSDYDREKLQERVAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_RHOPA (60 kDa chaperonin OS=Rhodopseudomonas palustris GN=groL PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.160e-59
Identity = 112/213 (52.58%), Postives = 157/213 (73.71%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGY+SP FVTN +K+  E E+  +L+ ++K+S+++ ++PLLE   Q + PLLI+AEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN +++ LG A+KV+I KD+TTI+  A  K EI+AR++Q++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMQKVGNEGVITVEENKGLETEVEVVEGMQFDRGYLSPYFVTNADKMTAELEDVFILLHEKKLSSLQPMVPLLESVIQAQRPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRTQIEETTSDYDREKLQERVAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_RHOCS (60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.127e-59
Identity = 114/213 (53.52%), Postives = 156/213 (73.24%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTN +K++ E E+  +L+ ++K+S ++ ++P+LE   Q   PLLI+AEDV GEALATLVVNKLRG L VAA+KAPGFG+RRKA+L+D+AI+TG +  + DLG+ +EN S+E LG A+KV I KD+TTI+  A SK++IQARI Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKALETELDVVEGMQFDRGYLSPYFVTNADKMVAELESPYILLFEKKLSGLQAMLPVLEAVVQSSRPLLIVAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDMAILTGGQVVSEDLGIKLENVSLEMLGQAKKVVITKDNTTIVDGAGSKEDIQARIVQIKAQIEETTSDYDREKLQERLAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_AMOA5 (60 kDa chaperonin OS=Amoebophilus asiaticus (strain 5a2) GN=groL PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.040e-59
Identity = 114/213 (53.52%), Postives = 152/213 (71.36%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+DKVG DGV+                GME DRGY+SP FVTN EK+  E  NA +L+ D+KIS +K+++P+LE  +Q   PLLIIAED+ GEALATLVVNK+RG L VAA+KAPGFG+RRKA+L+DIAI+TG    + + G  +EN +++ LGTA K+ I K++T I+     K++IQARI+Q++ ++  T S YD EKL ER+AKLSGGV
Sbjct:  163 DAMDKVGKDGVITVEEAKGTETEVKVVEGMEFDRGYLSPYFVTNTEKMEAELGNAYILICDKKISVMKELLPILEAISQTGRPLLIIAEDIEGEALATLVVNKIRGALKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEERGYKLENATLDYLGTAEKINIDKENTLIVNGGGKKEDIQARISQIRSQIENTTSDYDKEKLQERLAKLSGGV 375

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_NITWN (60 kDa chaperonin 2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL2 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.040e-59
Identity = 114/213 (53.52%), Postives = 157/213 (73.71%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGYISP FVTN EK+ VE ++A +L+ ++K+S++ +++PLLE   Q   PL+I+AEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN +++ LG A+KV I K++TTI+  A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNAEKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.195e-59
Identity = 114/213 (53.52%), Postives = 154/213 (72.30%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP F+TN EK+ VE ++  +L+ D+KI+ +KD++P+LE+  +   PLLIIAED+ GEALATLVVNKLRG+LN++A+KAPGFG+RRKA+L+DIAI+TG E  + +LG  +E+ ++  LG A  V I KD+TTI+  A  K  I ARI Q+K ++AET S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKSIQDELNVVEGMQFDRGYLSPYFITNAEKMQVELQSPYILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVVSEELGRTLESATLSDLGQASSVIIDKDNTTIVNGAGEKSAIDARIIQIKAQIAETTSDYDKEKLQERLAKLSGGV 375

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.195e-59
Identity = 112/213 (52.58%), Postives = 155/213 (72.77%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVT+PEK++ E +   +L  ++KIS +KD++P+LE+  +++ PL+IIAEDV GEALATLVVNKLRG L V AIKAPGFGERRKA+LQDIA++TG +  + D+G+ +EN SV  LGTA++V I K++TTI+  A   D+I+AR+ Q++ ++ ET S YD EKL ER+AKL GGV
Sbjct:  164 EAMSKVGKEGVITVEEAKGLETTLEVVEGMQFDRGYLSPYFVTDPEKMVCELDEPFILCNEKKISTMKDMLPVLEQVAKMQRPLVIIAEDVDGEALATLVVNKLRGALQVVAIKAPGFGERRKAMLQDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGV 376

The following BLAST results are available for this feature:

BLAST of BQ623016 vs. ExPASy Swiss-Prot

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH60_DICT6	1.853e-59	53.52	60 kDa chaperonin OS=Dictyoglomus thermophilum (st...	[more]
CH60_CAMFF	1.853e-59	53.52	60 kDa chaperonin OS=Campylobacter fetus subsp. fe...	[more]
CH60_CAMC5	2.420e-59	53.99	60 kDa chaperonin OS=Campylobacter curvus (strain ...	[more]
CH60_RHOS5	3.160e-59	52.58	60 kDa chaperonin OS=Rhodobacter sphaeroides (stra...	[more]
CH60_RHOPA	3.160e-59	52.58	60 kDa chaperonin OS=Rhodopseudomonas palustris GN...	[more]
CH60_RHOCS	4.127e-59	53.52	60 kDa chaperonin OS=Rhodospirillum centenum (stra...	[more]
CH60_AMOA5	7.040e-59	53.52	60 kDa chaperonin OS=Amoebophilus asiaticus (strai...	[more]
CH602_NITWN	7.040e-59	53.52	60 kDa chaperonin 2 OS=Nitrobacter winogradskyi (s...	[more]
CH60_WOLRE	9.195e-59	53.52	60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ...	[more]
CH60_DESVV	9.195e-59	52.58	60 kDa chaperonin OS=Desulfovibrio vulgaris subsp....	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT