BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623016_ssr48 microsatellite BQ623016_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:790..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_ACAM1 (60 kDa chaperonin 2 OS=Acaryochloris marina (strain MBIC 11017) GN=groL2 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.344e-54
Identity = 102/213 (47.89%), Postives = 152/213 (71.36%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM  ++GYISP F T+ E++    +   +L+TD+KI+ ++D++P+LE+  +   PLL+IAED+  EALATLVVN+LRG+LNVAA+KAPGFG+RRKA+L+DIA++TG +    D GL +E   +E +G AR++TI KD+TT++A+    D +QAR  Q+++++ ET+S YD EKL ER+AKL+GGV
Sbjct:  163 NAMDKVGKEGVISLEEGKSMTTELEVTEGMRFEKGYISPYFATDTERMEAVLDEPYILLTDKKITLVQDLVPVLEQAARAGKPLLVIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKAMLEDIAVLTGGQVITEDAGLKLETAKLEMMGQARRITITKDTTTLVAEGNEAD-VQARCEQIRRQMDETESSYDKEKLQERLAKLAGGV 374
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_BURXL (60 kDa chaperonin 1 OS=Burkholderia xenovorans (strain LB400) GN=groL1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.344e-54
Identity = 104/213 (48.83%), Postives = 148/213 (69.48%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP F+ NP+K +   EN  VL+ D+K+S I+D++P+LE+  +   PLLIIAEDV GEALATLVVN +RGIL   A+KAPGFG+RRKA+L+DIAI+TG +  A + GL +E  ++ +LG A+++ + K++TTII  A     I+AR+ Q++ ++ E  S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKEGVITVEDGKSLQDELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPILEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVAKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.061e-54
Identity = 108/213 (50.70%), Postives = 146/213 (68.54%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG DGV+                GM+ DRGYISP FVT+ EK+ V  +   +L+TD+K+SA+K +IP+LEK  Q   PLL+IAEDV GE L TLV+NKL+G L   A+KAPGFGERRKA+LQDIAI+TG +  + +LG+ +E+ ++E LG A  V ++KD T II      + I+ RIAQ+K ++ ET S Y+ E L ER+AKL+GGV
Sbjct:  162 EAMDKVGEDGVITVEDSKTLETYVEFTEGMQFDRGYISPYFVTDAEKMEVVLKEPFILITDRKLSAVKPLIPILEKVAQTGRPLLVIAEDVEGEVLTTLVLNKLKGTLQSCAVKAPGFGERRKAMLQDIAILTGGQVASEELGINLEDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGV 374
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.061e-54
Identity = 108/213 (50.70%), Postives = 146/213 (68.54%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG DGV+                GM+ DRGYISP FVT+ EK+ V  +   +L+TD+K+SA+K +IP+LEK  Q   PLL+IAEDV GE L TLV+NKL+G L   A+KAPGFGERRKA+LQDIAI+TG +  + +LG+ +E+ ++E LG A  V ++KD T II      + I+ RIAQ+K ++ ET S Y+ E L ER+AKL+GGV
Sbjct:  162 EAMDKVGEDGVITVEDSKTLETYVEFTEGMQFDRGYISPYFVTDAEKMEVVLKEPFILITDRKLSAVKPLIPILEKVAQTGRPLLVIAEDVEGEVLTTLVLNKLKGTLQSCAVKAPGFGERRKAMLQDIAILTGGQVASEELGINLEDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGV 374
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.061e-54
Identity = 108/213 (50.70%), Postives = 146/213 (68.54%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG DGV+                GM+ DRGYISP FVT+ EK+ V  +   +L+TD+K+SA+K +IP+LEK  Q   PLL+IAEDV GE L TLV+NKL+G L   A+KAPGFGERRKA+LQDIAI+TG +  + +LG+ +E+ ++E LG A  V ++KD T II      + I+ RIAQ+K ++ ET S Y+ E L ER+AKL+GGV
Sbjct:  162 EAMDKVGEDGVITVEDSKTLETYVEFTEGMQFDRGYISPYFVTDAEKMEVVLKEPFILITDRKLSAVKPLIPILEKVAQTGKPLLVIAEDVEGEVLTTLVLNKLKGTLQSCAVKAPGFGERRKAMLQDIAILTGGQVASEELGINLEDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGV 374
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_RALME (60 kDa chaperonin OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.061e-54
Identity = 104/213 (48.83%), Postives = 149/213 (69.95%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP F+ NPEK +V+ ++  VL+ D+K+S I+D++P+LE+  +   PLLIIAEDV GEALATLVVN +RGIL  AA+KAPGFG+RRKA+L+DIAI+TG    A ++GL +E  +++ LG A+++ I K++T II  A     I+ R+ Q++ ++ E  S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKEGVITVEDGKSLADELEVVEGMQFDRGYLSPYFINNPEKQVVQLDSPFVLLFDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGTVIAEEIGLTLEKATLQDLGQAKRIEIGKENTIIIDGAGDASAIEGRVKQIRAQIEEATSDYDREKLQERVAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_RALEH (60 kDa chaperonin OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.061e-54
Identity = 105/213 (49.30%), Postives = 147/213 (69.01%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP F+ NPEK +V+ +N  VL+ D+KIS I+D++P+LE+  +   PLLI+AEDV GEALATLVVN +RGIL  AA+KAPGFG+RRKA+L+DIAI+TG    A ++GL +E   +  LG A+++ I K++T II  A     I+ R+ Q++ ++ E  S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKEGVITVEDGKSLADELEVVEGMQFDRGYLSPYFINNPEKQVVQLDNPFVLLFDKKISNIRDLLPVLEQVAKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGTVIAEEIGLTLEKAGLNDLGQAKRIEIGKENTIIIDGAGDAAAIEGRVKQIRAQIEEATSDYDREKLQERVAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_MACCJ (60 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.061e-54
Identity = 103/213 (48.36%), Postives = 146/213 (68.54%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG DGV+                GM+ DRGY SP  VT+ +K+I + EN  +L+TD+KIS+ +DI+P+LE+  Q   P+LI+AEDV G+AL  +V+N+LRG     A+KAPGFG+RRKA+L+D+AI+TG +    DLGL +++T+VE LG A KV + KD+TTI+        I AR+ QLK ++ ET S +D EKL ER+AKL+GGV
Sbjct:  162 EAMEKVGNDGVITIEESKGFKTELEVVEGMQFDRGYASPYMVTDSDKMIADLENPYILITDKKISSFQDILPILEQIVQTSRPILIVAEDVDGDALTNIVLNRLRGTFTAVAVKAPGFGDRRKAMLEDLAILTGGQVITDDLGLDLKDTTVEMLGNAGKVHVTKDNTTIVEGRGDASNIDARVGQLKAQIEETTSEFDKEKLQERLAKLAGGV 374
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_DESHY (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groL PE=3 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.061e-54
Identity = 104/213 (48.83%), Postives = 148/213 (69.48%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+S   +T+ +K+     +  +L+TD+KI AI DI+P+LEK  Q    LLIIAED+ GEALATL++NKLRG     A+KAPGFG+RRKA+L+DIAI+TG      DLGL +ENT+++ LG AR++ + K+ TTI+  + S+D+I++R+  +KK++ ET S +D EKL ER+AKL+GGV
Sbjct:  162 DAMEKVGKDGVITVEEAKGMTTELKVVEGMQFDRGYLSAYMITDTDKMEAILNDPYILITDKKIGAIADILPVLEKVVQAGRQLLIIAEDIEGEALATLILNKLRGTFTCVAVKAPGFGDRRKAMLEDIAILTGGTVITEDLGLKLENTTIDMLGRARQIRVTKEETTIVEGSGSQDDIKSRVEAIKKQIDETTSDFDREKLQERLAKLAGGV 374
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_DESHD (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.061e-54
Identity = 104/213 (48.83%), Postives = 148/213 (69.48%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+S   +T+ +K+     +  +L+TD+KI AI DI+P+LEK  Q    LLIIAED+ GEALATL++NKLRG     A+KAPGFG+RRKA+L+DIAI+TG      DLGL +ENT+++ LG AR++ + K+ TTI+  + S+D+I++R+  +KK++ ET S +D EKL ER+AKL+GGV
Sbjct:  162 DAMEKVGKDGVITVEEAKGMTTELKVVEGMQFDRGYLSAYMITDTDKMEAILNDPYILITDKKIGAIADILPVLEKVVQAGRQLLIIAEDIEGEALATLILNKLRGTFTCVAVKAPGFGDRRKAMLEDIAILTGGTVITEDLGLKLENTTIDMLGRARQIRVTKEETTIVEGSGSQDDIKSRVEAIKKQIDETTSDFDREKLQERLAKLAGGV 374
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ACAM12.344e-5447.8960 kDa chaperonin 2 OS=Acaryochloris marina (strai... [more]
CH601_BURXL2.344e-5448.8360 kDa chaperonin 1 OS=Burkholderia xenovorans (st... [more]
CH60_THESQ3.061e-5450.7060 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP13.061e-5450.7060 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_THEMA3.061e-5450.7060 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]
CH60_RALME3.061e-5448.8360 kDa chaperonin OS=Ralstonia metallidurans (stra... [more]
CH60_RALEH3.061e-5449.3060 kDa chaperonin OS=Ralstonia eutropha (strain AT... [more]
CH60_MACCJ3.061e-5448.3660 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH60_DESHY3.061e-5448.8360 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_DESHD3.061e-5448.8360 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
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