BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623016_ssr48 microsatellite BQ623016_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:790..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_LISMF (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 106/213 (49.77%), Postives = 147/213 (69.01%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+++VG DGV+                GM+ DRGY SP  VT+ +K+    E   +L+TD+KI+ I++I+P+LE+  Q   P+LIIAEDV GEA ATLV+NKLRG  NV A+KAPGFG+RRKA+L+DIAI+TG +    DLGL ++  +V+QLGTA KV + KD TTI+  A    +I AR+ Q++ ++ ET S +D EKL ER+AKL+GGV
Sbjct:  162 EAMERVGNDGVITIEESKGFATELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYILITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_LISMC (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 106/213 (49.77%), Postives = 147/213 (69.01%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+++VG DGV+                GM+ DRGY SP  VT+ +K+    E   +L+TD+KI+ I++I+P+LE+  Q   P+LIIAEDV GEA ATLV+NKLRG  NV A+KAPGFG+RRKA+L+DIAI+TG +    DLGL ++  +V+QLGTA KV + KD TTI+  A    +I AR+ Q++ ++ ET S +D EKL ER+AKL+GGV
Sbjct:  162 EAMERVGNDGVITIEESKGFATELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYILITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 105/213 (49.30%), Postives = 150/213 (70.42%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+S   VT+ +K+  + +N  +L+TD+KIS I+DI+PLL++  Q    LLIIA+D+TGEAL TLV+NK+RG  NV A+KAPGFG+RRKA LQDIA +TG      DLGL +++T ++QLG AR++T+ KDSTTI+  A SK+ I  R+  ++K++ ++ S +D +KL ER+AKL+GGV
Sbjct:  162 DAMEKVGHDGVITIEDSRGINTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQEIVQQGKSLLIIADDITGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLQDIAALTGGTVITEDLGLELKDTKIDQLGQARRITVTKDSTTIVDGAGSKEAIDERVDTIRKQIEDSTSDFDKKKLQERLAKLTGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_ENTIT (60 kDa chaperonin (Fragment) OS=Enterobacter intermedius GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 106/213 (49.77%), Postives = 148/213 (69.48%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D+KIS I++++P+LE   +   PLLIIAEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIA +TG    + ++G+ +E  ++E +G A++V I KD+TTII     +  IQ R+AQ++K++ E  S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKEGVITVEDGTGLEDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDMGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_DESPS (60 kDa chaperonin OS=Desulfotalea psychrophila GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 102/213 (47.89%), Postives = 152/213 (71.36%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP FVT+PE++ V  ++  +L+ ++K+S +KD++P+LE+  ++   L I+AEDV GEALATLVVNKLRG +NVAA+KAPGFG+RRKA+L+DIAI+TG +  + DLG+ +EN ++  LGT +++   KD+TTI+  A    ++ +R+ Q+  ++A+T S YD EKL ER+AKL GGV
Sbjct:  164 EAMDKVGKEGVITVEEAKSMETTLDVVEGMQFDRGYLSPYFVTDPERMEVIMDDPYILLVEKKVSNMKDLLPVLEQVAKMGKGLFILAEDVDGEALATLVVNKLRGTINVAAVKAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLENVTLNDLGTCKRIVTDKDATTIVDGAGDAAQLSSRVKQIHAQIADTTSDYDREKLQERLAKLIGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CYAPA (60 kDa chaperonin, cyanelle OS=Cyanophora paradoxa GN=groL-A PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 105/213 (49.30%), Postives = 154/213 (72.30%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DAI+KVG +GV+                GM  D+GYISP FVT+PE++ V  ++A  L+TD+KI+ ++D++P+LE+  + R PL IIAED+  EALATLVVNKLRG LNV+A+KAPGFG+RRKA++QDIA++T  +  +   GL +++  ++ LG AR+V I KD TT+IA+  +++ + AR  Q+++++ ETDS Y+ EKL ER+AKL+GGV
Sbjct:  163 DAIEKVGKEGVISLEEGKSTTTELEITEGMRFDKGYISPYFVTDPERMEVIQKDAMFLITDKKITLVQDLVPILEQVARARKPLFIIAEDIEKEALATLVVNKLRGNLNVSAVKAPGFGDRRKAMMQDIAVLTNTQVISEQTGLRLDSIKLDVLGKARQVNITKDYTTVIAE-GNEEGVSARCEQIRRQIEETDSAYEKEKLQERLAKLAGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_COXBR (60 kDa chaperonin OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 102/213 (47.89%), Postives = 150/213 (70.42%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG +GV+                GM+ DRGY+SP F+ N + +  E EN  +L+ D+KIS I+++IPLLE   +   PLL+IAED+ GEALATLVVN +RG++ VAA+KAPGFG+RRKA+LQDIA++TG +  + ++GL +E  S++ LG+A++V + KD TTII  +    +I+ R+ Q++KE+  + S YD EKL ER+AKL+GGV
Sbjct:  164 EAMEKVGKEGVITVEDGSGLENALEVVEGMQFDRGYLSPYFINNQQNMSAELENPFILLVDKKISNIRELIPLLENIAKSGRPLLVIAEDIEGEALATLVVNNIRGVVKVAAVKAPGFGDRRKAMLQDIAVLTGGKVISEEVGLSLEAASLDDLGSAKRVVVTKDDTTIIDGSGDAGDIKNRVEQIRKEIENSSSDYDKEKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CHLCH (60 kDa chaperonin OS=Chlorobium chlorochromatii (strain CaD3) GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 106/213 (49.77%), Postives = 150/213 (70.42%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG DGV+                GM+ DRGY+SP FVTN + +  E +N  +L+ D+KIS +K+++P+LEK+ Q   PLLIIAED+ GEALATLVVNKLRG L V A+KAPGFG+RRKA+L+DIAI+TG    + + G  +EN ++  LG A  V++ KD+TT++    + D I+ARI ++K ++ ++ S YD+EKL ER+AKLSGGV
Sbjct:  164 EAMEKVGKDGVITVEEAKGMETELKVVEGMQFDRGYLSPYFVTNSDTMEAELDNPLILIYDKKISNMKELLPILEKSAQSGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATLSYLGQAGSVSLDKDNTTLVEGKGASDAIKARINEIKGQIEKSTSDYDTEKLQERLAKLSGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_BURTH (60 kDa chaperonin OS=Burkholderia thailandensis GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 104/213 (48.83%), Postives = 148/213 (69.48%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP F+ NP+K +   EN  VL+ D+K+S I+D++P+LE+  +   PLLIIAEDV GEALATLVVN +RGIL   A+KAPGFG+RRKA+L+DIAI+TG +  A + GL +E  ++ +LG A+++ + K++TTII  A     I+AR+ Q++ ++ E  S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_BURP8 (60 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 103/213 (48.36%), Postives = 149/213 (69.95%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP F+ NP+K +   +N  VL+ D+K+S I+D++P+LE+  +   PLLIIAEDV GEALATLVVN +RGIL   A+KAPGFG+RRKA+L+DIAI+TG +  A + GL +E  ++++LG A+++ + K++TTII  A     I+AR+ Q++ ++ E  S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKEGVITVEDGKSLQDELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLQELGQAKRIEVGKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGV 376          
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LISMF3.998e-5449.7760 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMC3.998e-5449.7760 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LACH43.998e-5449.3060 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH60_ENTIT3.998e-5449.7760 kDa chaperonin (Fragment) OS=Enterobacter inter... [more]
CH60_DESPS3.998e-5447.8960 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]
CH60_CYAPA3.998e-5449.3060 kDa chaperonin, cyanelle OS=Cyanophora paradoxa... [more]
CH60_COXBR3.998e-5447.8960 kDa chaperonin OS=Coxiella burnetii (strain RSA... [more]
CH60_CHLCH3.998e-5449.7760 kDa chaperonin OS=Chlorobium chlorochromatii (s... [more]
CH60_BURTH3.998e-5448.8360 kDa chaperonin OS=Burkholderia thailandensis GN... [more]
CH60_BURP83.998e-5448.3660 kDa chaperonin OS=Burkholderia phymatum (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
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