BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623016_ssr48 microsatellite BQ623016_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:790..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.201e-58
Identity = 115/213 (53.99%), Postives = 154/213 (72.30%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP F+TN +K+ VE E   VL+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L VAA+KAPGFG+RRKA+L+DIAI+TG    + DLG+ +EN ++E LG A+KV I K++TTI+  A SKDEIQ R++Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFITNQDKMRVELEEPYVLIHEKKLSNLQALLPVLEAVVQSSKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTAISEDLGIKLENVTLEMLGRAKKVVIEKENTTIVDGAGSKDEIQGRVSQIKSQIEETTSDYDKEKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_BRAJA (60 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groL1 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.201e-58
Identity = 114/213 (53.52%), Postives = 155/213 (72.77%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG DGV+                GM+ DRGY SP FVTN EK+ VEFE+  +L+ ++K+S ++ ++PLLE   Q   PLL++AEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+L+DIAI+TG +  + DLG+ +EN +++ LG A+KV I K++TTI+  A SK +I+AR+ Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMQKVGNDGVITVEEAKSLDTELEVVEGMQFDRGYASPYFVTNAEKMRVEFEDPYILIHEKKLSTLQSMLPLLEAVVQSGKPLLVVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQAISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGSKKDIEARVTQIKMQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_RHOCA (60 kDa chaperonin OS=Rhodobacter capsulatus GN=groL PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.568e-58
Identity = 112/213 (52.58%), Postives = 155/213 (72.77%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA  KVG +GV+                GM+ DRGY+SP FVTNP+K+I + E+A +L+ ++K+S+++ ++PLLE   Q   PL+I+AEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN +++ LG A+KVTI K++TTI+     K EI AR+A ++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DASQKVGNEGVITVEENKGMDTEVEVVEGMQFDRGYLSPYFVTNPDKMIADLEDAYILLHEKKLSSLQPMVPLLEAVIQSTRPLIIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISDDLGMKLENVTLDMLGRAKKVTISKENTTIVDGHGDKAEINARVAHIRTQIEETTSDYDREKLQERVAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_LAWIP (60 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.568e-58
Identity = 112/213 (52.58%), Postives = 154/213 (72.30%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTNPEK++ E +N  +L  ++KI+++KD++P+LE+  ++  PLLIIAEDV GEALATLVVNKLRG L V A+KAPGFGERRKA+L+DIAI+TG E    D G+ +EN S+  LGTA++V I K++TTI+  A   ++I+AR+ Q++ ++ ET S YD EKL ER+AKL GGV
Sbjct:  164 EAMAKVGKEGVITVEEAKGLETTLDVVEGMKFDRGYLSPYFVTNPEKMVCELDNPYILCNEKKITSMKDMLPILEQVAKVNRPLLIIAEDVEGEALATLVVNKLRGALQVVAVKAPGFGERRKAMLEDIAILTGGEAIFEDRGIKLENVSLSSLGTAKRVVIDKENTTIVDGAGKSEDIKARVKQIRAQIEETSSDYDREKLQERLAKLVGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CAUCR (60 kDa chaperonin OS=Caulobacter crescentus GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.568e-58
Identity = 113/212 (53.30%), Postives = 156/212 (73.58%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A+DKVG +GV+                GM+ DRGY+SP F+TN +K+ V+ E   +L+ ++K+S+++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L VAA+KAPGFG+RRKA+L+DIAI+TGA+  + D+G+ +EN S+E LG A+KV+I KD TTI+     K +I+ARIAQ+K+++ +T S YD EKL ER+AKL+GGV
Sbjct:  165 AMDKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLFEKKLSSLQPLLPVLEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLRVAAVKAPGFGDRRKAMLEDIAILTGAQVVSEDIGIKLENVSLEMLGRAKKVSITKDDTTIVDGVGEKADIEARIAQIKRQIEDTTSDYDKEKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CAUCN (60 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groL PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.568e-58
Identity = 113/212 (53.30%), Postives = 156/212 (73.58%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A+DKVG +GV+                GM+ DRGY+SP F+TN +K+ V+ E   +L+ ++K+S+++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L VAA+KAPGFG+RRKA+L+DIAI+TGA+  + D+G+ +EN S+E LG A+KV+I KD TTI+     K +I+ARIAQ+K+++ +T S YD EKL ER+AKL+GGV
Sbjct:  165 AMDKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLFEKKLSSLQPLLPVLEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLRVAAVKAPGFGDRRKAMLEDIAILTGAQVVSEDIGIKLENVSLEMLGRAKKVSITKDDTTIVDGVGEKADIEARIAQIKRQIEDTTSDYDKEKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CAMJD (60 kDa chaperonin OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.568e-58
Identity = 112/213 (52.58%), Postives = 154/213 (72.30%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP F+TN EK+ VE  +  +L+ D+KI+ +KD++P+LE+  +   PLLIIAED+ GEALATLVVNKLRG+LN++A+KAPGFG+RRKA+L+DIAI+TG E  + +LG  +E+ +++ LG A  V I KD+TT++  A  K  I AR+ Q+K ++AET S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPYILLFDKKIANLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTVVNGAGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH603_BRAJA (60 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groL3 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.568e-58
Identity = 113/213 (53.05%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VE ++A +L+ ++K+S++ +++PLLE   Q   PL+I+AEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN ++  LG A+KV I K++TTI+  A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAVKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLNMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.568e-58
Identity = 115/213 (53.99%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VE ++A VL+ ++K+S + +++PLLE   Q   PL+IIAEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN ++  LG A+KV I K++TTI++ A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMKKVGNEGVITVEEAKSLETELEVVEGMQFDRGYISPYFVTNADKMRVEMDDAYVLINEKKLSQLNELLPLLEAVVQSGKPLVIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLNMLGRAKKVMIDKENTTIVSGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_OCHA4 (60 kDa chaperonin OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=groL PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.048e-58
Identity = 111/213 (52.11%), Postives = 157/213 (73.71%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGY+SP FVTNPEK++ + E+A +L+ ++K+S ++ ++P+LE   Q   PL+IIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG +  + DLG+ +E  +++ LG A+KV+I K++TTI+  A  K EI AR++Q+K+++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLVIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLETVTLDMLGRAKKVSISKENTTIVDGAGQKAEIDARVSQIKQQIEETSSDYDREKLQERLAKLAGGV 376          
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_RHILO1.201e-5853.9960 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]
CH601_BRAJA1.201e-5853.5260 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
CH60_RHOCA1.568e-5852.5860 kDa chaperonin OS=Rhodobacter capsulatus GN=gro... [more]
CH60_LAWIP1.568e-5852.5860 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH60_CAUCR1.568e-5853.3060 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]
CH60_CAUCN1.568e-5853.3060 kDa chaperonin OS=Caulobacter crescentus (strai... [more]
CH60_CAMJD1.568e-5852.5860 kDa chaperonin OS=Campylobacter jejuni subsp. d... [more]
CH603_BRAJA1.568e-5853.0560 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN... [more]
CH602_BRAJA1.568e-5853.9960 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH60_OCHA42.048e-5852.1160 kDa chaperonin OS=Ochrobactrum anthropi (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
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