BQ623019

Overview
NameBQ623019
Unique NameBQ623019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:377..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: CH60_THAPS (60 kDa chaperonin, chloroplastic OS=Thalassiosira pseudonana GN=groL PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.270e-43
Identity = 91/185 (49.19%), Postives = 121/185 (65.41%), Query Frame = 1
Query:   25 NTS*NCTA*KRSWRETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE 579
            N    C   ++     ++ Y+ EKL +RIAKLSGG+AVI+VGA TETE++D+KLR+EDA NAT AA+EEGIVPGGGA L HLS+++          DE +GA I+ +A+VAP   IA NA            + E+  GYNA  + + NM   GV+DPAKVTR  LQNA S+A M+LTT+ I+V+
Sbjct:  341 NIKARCEQLRKQVNIAETSYEKEKLQDRIAKLSGGIAVIRVGAVTETEMKDKKLRLEDAINATRAAVEEGIVPGGGATLAHLSENLVTWSKTNLKEDELIGALIISRAIVAPLKRIAENAGINGPVVIGKVQEQEFEIGYNAAKNLFGNMYDEGVVDPAKVTRSGLQNATSIASMILTTECIIVD 525          
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: CH60_LACRJ (60 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groL PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.270e-43
Identity = 95/179 (53.07%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   52 KRSWRETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKP 585
            K+   ++ S +D EKL ER+AKLSGGVAV+KVGAATETEL+++K RIEDA NAT AA++EG VPGGG AL+++   +PA+ DK+E D DE  G +IV+ AL AP   IA NA            + +   GYNA   K+E+M++AG++DP  VTR ALQNAASV+ ++LTT+A+V +KP
Sbjct:  348 KQEIAKSTSDFDKEKLQERLAKLSGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAVVADKP 522          
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: CH60_LACRD (60 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groL PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.270e-43
Identity = 95/179 (53.07%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   52 KRSWRETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKP 585
            K+   ++ S +D EKL ER+AKLSGGVAV+KVGAATETEL+++K RIEDA NAT AA++EG VPGGG AL+++   +PA+ DK+E D DE  G +IV+ AL AP   IA NA            + +   GYNA   K+E+M++AG++DP  VTR ALQNAASV+ ++LTT+A+V +KP
Sbjct:  348 KQEIAKSTSDFDKEKLQERLAKLSGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAVVADKP 522          
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.270e-43
Identity = 95/183 (51.91%), Postives = 125/183 (68.31%), Query Frame = 1
Query:   52 KRSWRETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKAQNS 600
            ++   ++ S +D +KL ER+AKL+GGVAVI VGAATETEL++R+ RIEDA N+T AA++EG V GGG ALV++   V  +K   E  DE+ G +IV +AL AP   IA NA              E   GYNA TDK+ENM+ AG+IDP KVTR ALQNAAS+A ++LTT+A+V E P+ + S
Sbjct:  348 RKQIEDSTSDFDKKKLQERLAKLTGGVAVIHVGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALVNVEKAVREVKG--ETTDEQTGINIVLRALSAPVRQIAENAGKDGSVILDKLEHQENEIGYNAATDKWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAVVAEIPEPKQS 528          
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: CH602_SALTO (60 kDa chaperonin 2 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=groL2 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.270e-43
Identity = 93/174 (53.45%), Postives = 125/174 (71.84%), Query Frame = 1
Query:   70 TDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 588
            +DS +D EKLAER+AKLSGGVAVI+ GAATE E+++RK RIEDA  AT AA+EEG +PGGGAAL  +   +PA+ D L  D DE++G  IV+KALV P   IA NA            D +W  G +A T +Y ++ +AG++DP KVTR A+ NAAS+AG++LTT+++VV+KP+
Sbjct:  354 SDSEWDREKLAERLAKLSGGVAVIRAGAATEVEMKERKHRIEDAIAATKAAVEEGTIPGGGAALAQV---LPALDDDLGLDGDEKVGVSIVRKALVEPLRWIAQNAGHDGYVVVQKVVDKDWGHGLDAATGEYVDLAKAGILDPVKVTRNAVANAASIAGLLLTTESLVVDKPQ 524          
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 95/186 (51.08%), Postives = 129/186 (69.35%), Query Frame = 1
Query:   82 YDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSE-WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE--KPKAQNSGSRSDTRSYG 630
            Y+ EKL ERIAKL+GGVAVI+VGA TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ L+  V AIKD LE+ ++++GA+IV++AL  P  LIA NA             ++ +  GYNA T +YE+++ AG+IDP KV RC L++AASVA   LT+  +VVE  +P+A    +  D   +G
Sbjct:  313 YEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPEAAPLANPMDNSGFG 498          
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 97/191 (50.79%), Postives = 128/191 (67.02%), Query Frame = 1
Query:   67 ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE--KPKAQNSGSRSDTRSYG 630
            + +  Y+ EKL ERIAKLSGGVAVI+VGA TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ L+  V AIK  L++ +E++GADIV++AL  P  LIA NA             ++    GYNA T KYE+++ AG+IDP KV RC L++AASVA   L +  +VVE  +P+    G+  D   YG
Sbjct:  409 QAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYG 599          
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 97/180 (53.89%), Postives = 125/180 (69.44%), Query Frame = 1
Query:   52 KRSWRETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 588
            K    ET S Y+ E L ER+AKL+GGVAVIKVGAATETEL+++K RIEDA +AT AA+EEGIVPGGG  L+     V  + ++LE  DE++GA IV KAL AP   IA NA             ++    G++A+  +Y NM + G+IDPAKVTR ALQNAAS+AGM+LTT+ ++VEKP+
Sbjct:  348 KAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELE-GDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPE 526          
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 97/180 (53.89%), Postives = 125/180 (69.44%), Query Frame = 1
Query:   52 KRSWRETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 588
            K    ET S Y+ E L ER+AKL+GGVAVIKVGAATETEL+++K RIEDA +AT AA+EEGIVPGGG  L+     V  + ++LE  DE++GA IV KAL AP   IA NA             ++    G++A+  +Y NM + G+IDPAKVTR ALQNAAS+AGM+LTT+ ++VEKP+
Sbjct:  348 KAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELE-GDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPE 526          
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 97/180 (53.89%), Postives = 125/180 (69.44%), Query Frame = 1
Query:   52 KRSWRETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 588
            K    ET S Y+ E L ER+AKL+GGVAVIKVGAATETEL+++K RIEDA +AT AA+EEGIVPGGG  L+     V  + ++LE  DE++GA IV KAL AP   IA NA             ++    G++A+  +Y NM + G+IDPAKVTR ALQNAAS+AGM+LTT+ ++VEKP+
Sbjct:  348 KAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELE-GDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPE 526          
The following BLAST results are available for this feature:
BLAST of BQ623019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THAPS4.270e-4349.1960 kDa chaperonin, chloroplastic OS=Thalassiosira ... [more]
CH60_LACRJ4.270e-4353.0760 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_LACRD4.270e-4353.0760 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_LACH44.270e-4351.9160 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH602_SALTO4.270e-4353.4560 kDa chaperonin 2 OS=Salinispora tropica (strain... [more]
RUBB_SECCE5.576e-4351.08RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_ARATH5.576e-4350.79RuBisCO large subunit-binding protein subunit beta... [more]
CH60_THESQ5.576e-4353.8960 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP15.576e-4353.8960 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_THEMA5.576e-4353.8960 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00110 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00110 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623019 ID=BQ623019; Name=BQ623019; organism=Citrus sinensis; type=EST; length=650bp
TGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCCTG
AAAAAGGAGTTGGCGTGAGACGGATTCTGTTTATGACTCAGAGAAACTTG
CTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGA
GCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGC
CAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTG
GTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAG
CTTGAAGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACT
GGTAGCACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGG
TTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGTTACAATGCA
ATGACAGACAAGTATGAGAACATGCTTCAGGCTGGAGTTATTGATCCTGC
CAAGGTGACAAGATGTGCATTGCAGAATGCGGCTTCAGTTGCAGGAATGG
TCCTGACCACTCAGGCTATTGTCGTGGAGAAGCCCAAAGCCCAAAACTCC
GGTAGCCGCTCCGACACAAGGTCTTATGGGGTAATCTCTAGGACTCTTCC
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