BQ623021

Overview
NameBQ623021
Unique NameBQ623021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:326..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-24
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 322
            N++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:   79 NVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          

HSP 2 Score: 45.8246 bits (107), Expect = 1.838e-24
Identity = 17/35 (48.57%), Postives = 23/35 (65.71%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            DSP+ GG F + +  P +YP   PKV F TK++HP
Sbjct:   44 DSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHP 78          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.113e-24
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 325
            NI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KS++A+   TA+ WT+ YA G
Sbjct:   81 NIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          

HSP 2 Score: 46.595 bits (109), Expect = 3.113e-24
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 1
Query:    1 SDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            + SPY GGVF + +  P +YP   PKV F TK++HP
Sbjct:   45 TQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHP 80          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.113e-24
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 325
            NI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KS++A+   TA+ WT+ YA G
Sbjct:   81 NIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          

HSP 2 Score: 46.595 bits (109), Expect = 3.113e-24
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 1
Query:    1 SDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            + SPY GGVF + +  P +YP   PKV F TK++HP
Sbjct:   45 TQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHP 80          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.618e-22
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++ +  + AR WT+ YA
Sbjct:   79 NIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          

HSP 2 Score: 45.4394 bits (106), Expect = 1.618e-22
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            DSP+ GGVF + +    DYP   PKV F TK++HP
Sbjct:   44 DSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHP 78          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.598e-22
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  110 NINSNGSICLDILK----EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 322
            NI+S G ICLDILK      W PAL IS VL SI  L+++PNPDDPL+ +I+  +K ++A + S A+ WT+K+A+
Sbjct:   78 NIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          

HSP 2 Score: 48.1358 bits (113), Expect = 4.598e-22
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 1
Query:    1 SDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            S SPY GG+F + I  P  YPF+PPK+ F T ++HP
Sbjct:   42 SGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHP 77          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.313e-21
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  110 NINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  D+  +  TA  WT+ YA
Sbjct:   79 NISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          

HSP 2 Score: 52.373 bits (124), Expect = 1.313e-21
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1
Query:    7 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            +PY GG F+V I  P +YPFKPPK+ F TKV+HP
Sbjct:   45 TPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP 78          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.313e-21
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  110 NINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            N++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA
Sbjct:   80 NVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          

HSP 2 Score: 53.1434 bits (126), Expect = 1.313e-21
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1
Query:    7 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPEHQQQ 123
            +PY GG F+V I  P DYPF+PPK+ F TK++HP    Q
Sbjct:   46 TPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQ 84          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.733e-21
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  119 SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL  EIA  +K+D+  +  TA+ WT+KYA
Sbjct:   82 SDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          

HSP 2 Score: 48.521 bits (114), Expect = 1.733e-21
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 1
Query:    7 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            SP+  GVF + I  P DYPFKPP + F TK++HP
Sbjct:   44 SPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHP 77          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.901e-21
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  110 NINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + STAR WT+ +A
Sbjct:   79 NISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          

HSP 2 Score: 49.2914 bits (116), Expect = 2.901e-21
Identity = 20/39 (51.28%), Postives = 25/39 (64.10%), Query Frame = 1
Query:    7 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPEHQQQ 123
            +PY GG F + I  P  YPF+PPK+ F TKV+HP    Q
Sbjct:   45 TPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQ 83          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.090e-20
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            N +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y++D+  ++  AR + +++A
Sbjct:   83 NFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          

HSP 2 Score: 51.9878 bits (123), Expect = 1.090e-20
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 1
Query:    1 SDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPEHQQQ 123
            SDS YAGG F  ++ FP DYPF+PP + F T+++HP    +
Sbjct:   47 SDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSE 87          
The following BLAST results are available for this feature:
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
UBE2N_BOVIN1.838e-2456.34Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC36_ARATH3.113e-2458.33Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH3.113e-2458.33Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_DICDI1.618e-2254.29Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2T_XENLA4.598e-2250.67Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC1_YEAST1.313e-2146.48Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC1_SCHPO1.313e-2145.07Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBCB_DICDI1.733e-2150.75Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC27_ARATH2.901e-2150.70Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC14_SCHPO1.090e-2042.25Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00112 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00112 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623021 ID=BQ623021; Name=BQ623021; organism=Citrus sinensis; type=EST; length=526bp
TCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCC
TCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCT
TCCACCCTGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAA
AGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCT
GCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATT
GCCCACATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAG
CTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAA
AAAGGAGCATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTCTT
TAACTTGCTTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGGGA
GGAGTTGCAAGGGCGGGACGTTTTTATGTTAATGTTGAATGTTTGTGTTT
GAAGCTTCTTCGATGGAACGTAGTTA
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