BQ623044 | Citrus Genome Database

Overview


Name	BQ623044
Unique Name	BQ623044
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	372

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
BQ623044_ssr1	microsatellite	BQ623044_ssr1:1..12.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12813	contig	Csv1_Contig12813:131..502.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM1_XENTR (Methionine aminopeptidase 1 OS=Xenopus tropicalis GN=metap1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.303e-18
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHN-RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            + GHG+ K+FH+ P + H  +N+  G M  G  FTIEP++  G  +  TWPD WT +T DG  +AQFEH++L+T TG EILT
Sbjct:  291 YCGHGIHKLFHTAPNVPHYAKNKAVGVMKPGHVFTIEPMICEGGWQDETWPDGWTAITRDGKRSAQFEHTLLVTETGCEILT 372

HSP 2 Score: 21.1718 bits (43), Expect = 5.303e-18
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 1

Query:   19 EHAEKYGFGVVEPFC 63
            +HA+  GF VV  +C
Sbjct:  278 KHAQANGFSVVRSYC 292

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM1_DANRE (Methionine aminopeptidase 1 OS=Danio rerio GN=metap1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 6.894e-18
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHN-RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            + GHG+ K+FH+ P + H  +N+  G M  G  FTIEP++  G  +  TWPD WT +T DG  +AQFEH++L+T TG EILT
Sbjct:  290 YCGHGIHKLFHTAPNVPHYAKNKAVGVMKPGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTETGCEILT 371

HSP 2 Score: 21.1718 bits (43), Expect = 6.894e-18
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 1

Query:   19 EHAEKYGFGVVEPFC 63
            +HA+  GF VV  +C
Sbjct:  277 KHAQANGFSVVRSYC 291

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMP1D_HUMAN (Methionine aminopeptidase 1D, mitochondrial OS=Homo sapiens GN=MAP1D PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.172e-18
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            FVGHG+G  FH  P I+H+ N++   M EG  FTIEPI+T GS E     D WT ++ D   +AQFEH++LIT  GA+ILT
Sbjct:  249 FVGHGIGSYFHGHPEIWHHANDSDLPMEEGMAFTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITSRGAQILT 329

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM1_PONAB (Methionine aminopeptidase 1 OS=Pongo abelii GN=METAP1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.964e-18
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHN-RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            + GHG+ K+FH+ P + H  +N+  G M  G  FTIEP++  G  +  TWPD WT +T DG  +AQFEH++L+T TG EILT
Sbjct:  291 YCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 372

HSP 2 Score: 21.1718 bits (43), Expect = 8.964e-18
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 1

Query:   19 EHAEKYGFGVVEPFC 63
            +HA+  GF VV  +C
Sbjct:  278 KHAQANGFSVVRSYC 292

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM1_MOUSE (Methionine aminopeptidase 1 OS=Mus musculus GN=Metap1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.964e-18
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHN-RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            + GHG+ K+FH+ P + H  +N+  G M  G  FTIEP++  G  +  TWPD WT +T DG  +AQFEH++L+T TG EILT
Sbjct:  291 YCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 372

HSP 2 Score: 21.1718 bits (43), Expect = 8.964e-18
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 1

Query:   19 EHAEKYGFGVVEPFC 63
            +HA+  GF VV  +C
Sbjct:  278 KHAQANGFSVVRSYC 292

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM1_HUMAN (Methionine aminopeptidase 1 OS=Homo sapiens GN=METAP1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 8.964e-18
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHN-RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            + GHG+ K+FH+ P + H  +N+  G M  G  FTIEP++  G  +  TWPD WT +T DG  +AQFEH++L+T TG EILT
Sbjct:  291 YCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 372

HSP 2 Score: 21.1718 bits (43), Expect = 8.964e-18
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 1

Query:   19 EHAEKYGFGVVEPFC 63
            +HA+  GF VV  +C
Sbjct:  278 KHAQANGFSVVRSYC 292

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM1_CHICK (Methionine aminopeptidase 1 OS=Gallus gallus GN=METAP1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.166e-17
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHN-RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            + GHG+ K+FH+ P + H  +N+  G M  G  FTIEP++  G  +  TWPD WT +T DG  +AQFEH++L+T TG EILT
Sbjct:  291 YCGHGIHKLFHTAPNVPHYAKNKAVGVMKPGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 372

HSP 2 Score: 21.1718 bits (43), Expect = 1.166e-17
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 1

Query:   19 EHAEKYGFGVVEPFC 63
            +HA+  GF VV  +C
Sbjct:  278 KHAQANGFSVVRSYC 292

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMP1D_DANRE (Methionine aminopeptidase 1D, mitochondrial OS=Danio rerio GN=map1d PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            F+GHG+G+ FH  P I+H+ N+N   M EG +FTIEPIL  G+       D WT ++ D   +AQFEH+++IT  G EILT
Sbjct:  252 FIGHGIGEYFHGHPEIWHHANDNDLKMEEGMSFTIEPILMEGTSGFRILSDKWTAVSVDDKRSAQFEHTVVITSDGVEILT 332

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_BUCAP (Methionine aminopeptidase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=map PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.857e-16
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            + GHG+G+ FH EP + H +N++   + +G  FTIEP++  GS E     D WT  T D S +AQ+EH++LIT  G +ILT
Sbjct:  167 YCGHGIGRAFHEEPYVLHYKNKSHVILEKGMIFTIEPMINAGSHEVKCMKDGWTVKTKDHSLSAQYEHTVLITENGCDILT 247

[Close]

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMP1D_DICDI (Methionine aminopeptidase 1D, mitochondrial OS=Dictyostelium discoideum GN=map1d PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 2

Query:   59 FVGHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPIL---TMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            F GHG+G++FH+ P ++   NE    M EG  FTIEP+L   T    E   W D WT  + +G  +AQFEH+IL+T+ G EILT
Sbjct:  320 FTGHGIGQLFHTAPFVFQCANEFDSVMKEGMIFTIEPVLVESTSPYAEWKMWDDKWTVSSREGGWSAQFEHTILVTKDGYEILT 403

The following BLAST results are available for this feature:

BLAST of BQ623044 vs. ExPASy Swiss-Prot

BLAST of BQ623044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44


Match Name	E-value	Identity	Description
AMPM1_XENTR	5.303e-18	48.78	Methionine aminopeptidase 1 OS=Xenopus tropicalis ...	[more]
AMPM1_DANRE	6.894e-18	48.78	Methionine aminopeptidase 1 OS=Danio rerio GN=meta...	[more]
AMP1D_HUMAN	8.172e-18	51.85	Methionine aminopeptidase 1D, mitochondrial OS=Hom...	[more]
AMPM1_PONAB	8.964e-18	48.78	Methionine aminopeptidase 1 OS=Pongo abelii GN=MET...	[more]
AMPM1_MOUSE	8.964e-18	48.78	Methionine aminopeptidase 1 OS=Mus musculus GN=Met...	[more]
AMPM1_HUMAN	8.964e-18	48.78	Methionine aminopeptidase 1 OS=Homo sapiens GN=MET...	[more]
AMPM1_CHICK	1.166e-17	48.78	Methionine aminopeptidase 1 OS=Gallus gallus GN=ME...	[more]
AMP1D_DANRE	1.180e-16	48.15	Methionine aminopeptidase 1D, mitochondrial OS=Dan...	[more]
AMPM_BUCAP	5.857e-16	44.44	Methionine aminopeptidase OS=Buchnera aphidicola s...	[more]
AMP1D_DICDI	1.305e-15	46.43	Methionine aminopeptidase 1D, mitochondrial OS=Dic...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00135 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00135 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623044 ID=BQ623044; Name=BQ623044; organism=Citrus sinensis; type=EST; length=372bp
GAGAGAGAGAGAACTAGTGAGCACGCTGAGAAATATGGTTTCGGTGTAGT
GGAACCGTTTTGTTGGGCATGGCGTAGGGAAAGTCTTTCATTCCGAGCCA
ATCATATATCATAACCGTAATGAAAATCCTGGCTGTATGGTTGAAGGTCA
AACATTTACAATTGAACCAATTCTTACAATGGGAAGCATTGAGTGTATAA
CTTGGCCTGACAACTGGACGACTTTGACTGCTGATGGCAGCCCTGCTGCA
CAGTTTGAGCATTCTATTTTAATTACTAGAACTGGCGCAGAAATTTTAAC
AATATGTTGAAACAATCATTTGATTACTAATAATTTTTGGCCACATTGTA
CAATAATATAAGTACATGGTGA