BQ623056

Overview
NameBQ623056
Unique NameBQ623056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623056_ssr384 microsatellite BQ623056_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            +A  AEF +M+IFV    GS + +    +     P  +V  S+    ++   V    +ISGGH+NPAVT        I+  +S+ Y  AQ LG+++   +L   T     GGL  +   +   + A + ++ E+++TF LV+T +A+  D KR
Sbjct:   39 KAVTAEFLAMLIFVLLSVGSTINWGGSEN---PLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVGGLGVT--TVHGNLTAGHGLLVELIITFQLVFTIFASC-DSKR 185          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            +A  AEF +M+IFV    GS + +    +     P  +V  S+    ++   V    +ISGGH+NPAVT        I+  +S+ Y  AQ LG+++   +L   T     GGL  +   +   + A + ++ E+++TF LV+T +A+  D KR
Sbjct:   36 KAVTAEFLAMLIFVLLSLGSTINWGGKEN---PLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVT--TVHGNLTAGHGLLVELIITFQLVFTIFASC-DSKR 182          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_PROHA (Aquaporin-2 (Fragment) OS=Procavia capensis habessinica GN=AQP2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL 400
            RA ++EF + ++FVF G GS + + +   +       ++  ++A   A+   V    +ISG H+NPAVT    VG H++F+R++ Y  AQLLG+V    LL
Sbjct:    6 RAVLSEFLATLLFVFFGLGSALNWPQALPS-------VLQIAMAFGLAIGTLVQTLGHISGAHINPAVTIACLVGCHVSFLRALFYLAAQLLGAVAGAALL 99          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            +A  AEF +M+IFV    GS + +          P  +V  S+    ++   V    +ISGGH+NPAVT        I+  +S+ Y  AQ LG+++   +L   T     GGL  +   +   + A + ++ E+++TF LV+T +A+  D KR
Sbjct:   36 KAVTAEFLAMLIFVLLSLGSTINWG---GTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVT--MVHGNLTAGHGLLVELIITFQLVFTIFASC-DSKR 182          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_RABIT (Aquaporin-2 (Fragment) OS=Oryctolagus cuniculus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSA-SIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL 400
            RA  AEF + ++FVF G GS + +          P+ L S   IA AF L +   V A  ++SG H+NPAVT    VG H++F+R+  Y  AQLLG+V    LL
Sbjct:    6 RAVFAEFLATLLFVFFGLGSALNW----------PSALPSTLQIAMAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_HORSE (Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.204e-11
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL 400
            RA +AEF + ++FVF G GS + + +        P+ L    IA AF L +   V A  ++SG H+NPAVT    VG H++F+R+  Y  AQLLG+V    LL
Sbjct:    6 RAVLAEFLATLLFVFFGLGSALNWPQ------AMPSVL---QIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_MACPR (Aquaporin-2 (Fragment) OS=Macroscelides proboscideus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLV-SASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL 400
            RA  +EF + ++FVF G GS + +       +T P   V   S+A   A+   V    +ISG H+NPAVT    VG H++F+R+  Y  AQLLG+V    LL
Sbjct:    6 RAVFSEFLATLLFVFFGLGSALNWP------STVPIPTVLQISMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRATFYVAAQLLGAVAGAALL 101          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_CANFA (Aquaporin-2 (Fragment) OS=Canis familiaris GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSA-SIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL 400
            RA  AEF + ++FVF G GS + +          P  L S   IA AF L +   V A  ++SG H+NPAVT    VG H++F+R+  Y  AQLLG+V    LL
Sbjct:    6 RAVFAEFLATLLFVFFGLGSALNW----------PQALPSVLQIAMAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 46/154 (29.87%), Postives = 72/154 (46.75%), Query Frame = 2
Query:  110 AEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL--------KFSTGGLETSAFALSS--GVGAWNAVVFEIVMT--FGLVYTGYATAVDP 535
            AEFF     VF G GS +  +   + G     G +  ++A    +         ISGGH NPAV+ G  V G +     I YW+AQ+LG++ A  +L         FS GGL ++ +   S  G      ++ EI++T  F ++  G  +++ P
Sbjct:    7 AEFFGTFWLVFGGCGSAILAAAFPELGI----GFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAP 156          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 46/154 (29.87%), Postives = 72/154 (46.75%), Query Frame = 2
Query:  110 AEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL--------KFSTGGLETSAFALSS--GVGAWNAVVFEIVMT--FGLVYTGYATAVDP 535
            AEFF     VF G GS +  +   + G     G +  ++A    +         ISGGH NPAV+ G  V G +     I YW+AQ+LG++ A  +L         FS GGL ++ +   S  G      ++ EI++T  F ++  G  +++ P
Sbjct:    7 AEFFGTFWLVFGGCGSAILAAAFPELGI----GFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAP 156          
The following BLAST results are available for this feature:
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
AQP4_NOTAL1.879e-1130.72Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_DIPME1.879e-1130.72Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP2_PROHA1.879e-1135.64Aquaporin-2 (Fragment) OS=Procavia capensis habess... [more]
AQP4_HUMAN2.454e-1130.72Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP2_RABIT2.454e-1141.35Aquaporin-2 (Fragment) OS=Oryctolagus cuniculus GN... [more]
AQP2_HORSE3.204e-1140.78Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 P... [more]
AQP2_MACPR4.185e-1139.22Aquaporin-2 (Fragment) OS=Macroscelides proboscide... [more]
AQP2_CANFA4.185e-1141.35Aquaporin-2 (Fragment) OS=Canis familiaris GN=AQP2... [more]
AQPZ_BRUME5.466e-1129.87Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
AQPZ_BRUAB5.466e-1129.87Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00147 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623056 ID=BQ623056; Name=BQ623056; organism=Citrus sinensis; type=EST; length=642bp
AGAGCTCGAAGCTAAAACTAAAACTTGCCAAGAAAATTAAAAAATGCCCG
GAATTGCTATCGGAAACCCGGCTGAGATCGGCCAGCCCGATGCCCTTAGG
GCGGCTGTCGCTGAGTTTTTCTCCATGGTCATTTTTGTTTTTGCCGGCCA
AGGGTCTGGCATGGCTTACAGCAAGCTCACGGACAATGGAGCAACAACAC
CAGCAGGTCTAGTGTCAGCATCAATAGCTCATGCATTTGCCCTCTTCGTG
GCAGTTTCTGTTGGCGCCAACATCTCCGGTGGACACGTGAACCCCGCTGT
TACTTTCGGTGCCTTTGTTGGCGGCCACATTACATTTGTCAGGAGTATTT
TGTACTGGATTGCCCAGTTACTCGGATCTGTTGTTGCTTGCTTGCTTCTC
AAGTTCTCCACTGGTGGATTGGAAACATCTGCTTTTGCCCTGTCATCTGG
AGTTGGTGCATGGAATGCAGTTGTGTTTGAGATTGTGATGACCTTTGGAC
TGGTCTACACGGGGTATGCCACAGCTGTTGACCCAAAGAGGGGAAACATT
GGCATCATTGCACCAATTGCAATTGGGTTATTGGTGGGGCCCACATCTTG
GCTGGGGGGGCCTTTGATGGGGCATCGATGACCCCTGAGTTT
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