BQ623056

Overview
NameBQ623056
Unique NameBQ623056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623056_ssr384 microsatellite BQ623056_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.823e-31
Identity = 70/166 (42.17%), Postives = 94/166 (56.63%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            M  + +G+  E  +PD  R  + E     +FVF G G+ M     T  G+T    L + ++  A  + V  + G +ISGGHVNPAVT    VGGH+T  RS LY  AQ+L S  AC LL++ TGGL T   AL+ GVG    VV E V TF L++  YAT +DP++
Sbjct:    1 MGKLTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMT-DGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRK 165          

HSP 2 Score: 23.8682 bits (50), Expect = 4.823e-31
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  586 GAHILAGGAFDGASMTP 636
            GA+ +AG A  GASM P
Sbjct:  180 GANSVAGAALSGASMNP 196          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.289e-29
Identity = 66/153 (43.14%), Postives = 95/153 (62.09%), Query Frame = 2
Query:   86 PDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            P ALRA  AEFFS  +FVF   GS ++   LT +  +  + L++ ++A AF LF AV + A++SGGHVNPAVTF   +GGHIT   +I YW +Q+LGS  ACL+L + + G       ++  +  + A + E V+TF +VYT +  A DP+ G
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH-VAGDPRGG 165          

HSP 2 Score: 24.2534 bits (51), Expect = 3.289e-29
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  580 IGGAHILAGGAFDGASMTP 636
            + GA +LA G+  GASM P
Sbjct:  186 VTGACVLAAGSLTGASMNP 204          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.408e-29
Identity = 77/193 (39.90%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  + +G+  E  +P  LRA   E     +FVF G  S +   K    GA   A + +A++A A  + V  + G ++SGGH+NPAVT    VGGHIT  RS LY  AQL GS +ACLLL+  TGG  T   AL+ GVG    V  E V TF L+    AT +DP+R              VG  +  GG L G
Sbjct:    6 MTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTG 197          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.915e-29
Identity = 74/184 (40.22%), Postives = 99/184 (53.80%), Query Frame = 2
Query:   74 EIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP-AGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            EI     +RA +AE     +FVF G  + MA       G   P A L + +IAHA A  V V+ G ++SGGH+NPAVT G  V GHIT +R++LY  AQLL S  AC+LL+F +GG+ T   AL  G+     +V E+++TF L++  YA  +DP R              VG  S  GG   G
Sbjct:   16 EIPDVGCVRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRAIGPLLTGLIVGANSLAGGNFTG 198          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.768e-28
Identity = 74/186 (39.78%), Postives = 102/186 (54.84%), Query Frame = 2
Query:   74 EIGQPDA--LRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP-AGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            E   PD   +RA +AE     +FVF G  + MA       G   P A L + +IAHA A  V V+ G ++SGGH+NPAVT G  V GHIT +R++LY  AQLL S +AC+LL++ +GG+ T   AL +G+     +V E+++TF L++  YA  +DP R              VG  S  GG   G
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRTIGPLLTGLIVGANSLAGGNFTG 200          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.768e-28
Identity = 74/184 (40.22%), Postives = 98/184 (53.26%), Query Frame = 2
Query:   74 EIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP-AGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            E+     +RA +AE     +FVF G  + MA       GA  P A L   +IA A A  V V+ G ++SGGH+NPAVT      GHIT  RS LY  AQLL S +AC+LL++ TGG+ T    L SG+G    +V EI++TF L++  YAT +DP R +            VG  +  GG   G
Sbjct:   12 EVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDP-RSSVPGFGPLLTGLIVGANTIAGGNFSG 194          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.077e-26
Identity = 61/141 (43.26%), Postives = 85/141 (60.28%), Query Frame = 2
Query:   92 ALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAG-LVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYT 511
            +LR+ +AEF S  +FVF   GS ++   LT    T+ AG LV+ ++A AF LF AV + A++SGGHVNPAVTF   +GG I    ++ YW +QLLG+  ACL L   + G E     ++  +  +   V E V+TF LVYT
Sbjct:   18 SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYT 158          

HSP 2 Score: 25.7942 bits (55), Expect = 4.077e-26
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  586 GAHILAGGAFDGASMTP 636
            GA +LA GA  GASM P
Sbjct:  193 GAFVLAAGALTGASMNP 209          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 67/178 (37.64%), Postives = 95/178 (53.37%), Query Frame = 2
Query:   89 DALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            +ALR  V+EF S   FV A  GS M+  KL     + P G++  +IA+A AL  +V +  N+SGGHVNPAVTF   V G I+   ++ YW +Q++ SV+ACL+LK +        + ++  +  + A V E V+ F LVYT + TA DP+RG              G      GP  G
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFVAGANVLAAGPFSG 196          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.435e-19
Identity = 69/179 (38.55%), Postives = 97/179 (54.19%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTD---NGATTPAGLVSA-SIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FST-------GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   + + AE+G     RA +AEF + ++F++    + + Y   TD   +GA    G V    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++ VR+ILY +AQ LG++    L+K F +       GG  T A   S G G    +  EI+ TF LVYT + +A DPKR
Sbjct:   25 PPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGANTLAAGYSKGTG----LAAEIIGTFVLVYTVF-SATDPKR 198          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.448e-19
Identity = 61/166 (36.75%), Postives = 91/166 (54.82%), Query Frame = 2
Query:   74 EIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP----AGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            E+G+    RA +AEF + ++F++    + + Y   TD  A+ P    +G+    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++ VR++LY  AQ LG++    L+K    G        A  +S+G      +  EI+ TF LVYT + +A DPKR
Sbjct:   33 ELGKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKR 197          
The following BLAST results are available for this feature:
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
TIP43_MAIZE4.823e-3142.17Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP51_ORYSJ3.289e-2943.14Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP42_ORYSJ3.408e-2939.90Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE9.915e-2940.22Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP42_MAIZE3.768e-2839.78Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_ORYSJ3.768e-2840.22Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP51_MAIZE4.077e-2643.26Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
TIP51_ARATH8.686e-2537.64Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
PIP21_ORYSJ1.435e-1938.55Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP26_MAIZE2.448e-1936.75Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00147 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623056 ID=BQ623056; Name=BQ623056; organism=Citrus sinensis; type=EST; length=642bp
AGAGCTCGAAGCTAAAACTAAAACTTGCCAAGAAAATTAAAAAATGCCCG
GAATTGCTATCGGAAACCCGGCTGAGATCGGCCAGCCCGATGCCCTTAGG
GCGGCTGTCGCTGAGTTTTTCTCCATGGTCATTTTTGTTTTTGCCGGCCA
AGGGTCTGGCATGGCTTACAGCAAGCTCACGGACAATGGAGCAACAACAC
CAGCAGGTCTAGTGTCAGCATCAATAGCTCATGCATTTGCCCTCTTCGTG
GCAGTTTCTGTTGGCGCCAACATCTCCGGTGGACACGTGAACCCCGCTGT
TACTTTCGGTGCCTTTGTTGGCGGCCACATTACATTTGTCAGGAGTATTT
TGTACTGGATTGCCCAGTTACTCGGATCTGTTGTTGCTTGCTTGCTTCTC
AAGTTCTCCACTGGTGGATTGGAAACATCTGCTTTTGCCCTGTCATCTGG
AGTTGGTGCATGGAATGCAGTTGTGTTTGAGATTGTGATGACCTTTGGAC
TGGTCTACACGGGGTATGCCACAGCTGTTGACCCAAAGAGGGGAAACATT
GGCATCATTGCACCAATTGCAATTGGGTTATTGGTGGGGCCCACATCTTG
GCTGGGGGGGCCTTTGATGGGGCATCGATGACCCCTGAGTTT
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