BQ623056

Overview
NameBQ623056
Unique NameBQ623056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623056_ssr384 microsatellite BQ623056_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.643e-16
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDN--GATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF + ++F++    + + Y   +D   G     G+    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++ +R++LY +AQ LG++     +K F +   +     A +L+ G      +  EI+ TF LVYT + +A DPKR
Sbjct:   37 RAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKR 191          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.643e-16
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTGYAT 523
            RA VAEF +M +F+F   GS + +     N  T+ A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I+ +R+++Y IAQ +G++VA  +L   T  L  ++  L+S   GV +   +  EI+ T  LV    AT
Sbjct:   12 RAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLAT 158          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.643e-16
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVGAWNAVVFEIVMTFGLVYTGYAT 523
            RA VAEF +M++F+F   GS + +     +  TT A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I+ +R+I+Y IAQ +G++VA  +L   T  L  ++    AL+ GV +   +  EI+ T  LV    AT
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT 158          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK------FSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF + ++F++    + + Y     + A    G+ +  IA AF   +F+ V   A ISGGH+NPAVTFG  +   ++ +R+++Y +AQ LG +V   ++K      ++  G    A  ++SG     A+  EI+ TF LVYT + +A DPKR
Sbjct:   38 RALIAEFIATLLFLYITVATVIGYK--VQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANG--GGANMVASGYSTGTALGAEIIGTFVLVYTVF-SATDPKR 188          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 56/159 (35.22%), Postives = 85/159 (53.46%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDN--GATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-------FSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF + ++F++    + + Y   +D   G     G+    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++ +R++LY +AQ LG++     +K        + GG    A  L+ G      +  EI+ TF LVYT + +A DPKR
Sbjct:   37 RAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGG---GANFLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKR 191          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 58/170 (34.12%), Postives = 90/170 (52.94%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETS-----AFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   + +  E+G+    RAA+AEF + ++ V     + +   + +  G    AG++  + A    +FV V   A ISGGH+NPAVTF   +   ++  R+ LY +AQ +G+V    L +   GG + +     A  L++G  A   VV E+V TF LVYT + +A DPKR
Sbjct:   18 PPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKR 183          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST--------GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF + ++F++    + + +   T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++  R++ Y +AQ LG++    L+K           GG  T A   S+G     A+  EI+ TF LVYT + +A DPKR
Sbjct:   36 RAIIAEFIATLLFLYVTVATVIGHKNQT--GPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTG----TALGAEIIGTFVLVYTVF-SATDPKR 184          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.801e-15
Identity = 52/155 (33.55%), Postives = 83/155 (53.55%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGN 547
            RA +AEF + ++FVF G GS + +       A++P  ++  ++A    + + V    ++SG H+NPAVT    VG H++F+R+  Y  AQLLG+V    +L   T     G L  +  AL +   A  AV  E+ +T  LV   +A + D +RG+
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLVLCIFA-STDERRGD 155          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.658e-15
Identity = 52/152 (34.21%), Postives = 77/152 (50.66%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+I Y +AQLLG+V    +L   T        AL++   GV    A + EI +T   V   +AT  + + G
Sbjct:   11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.239e-15
Identity = 52/152 (34.21%), Postives = 77/152 (50.66%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+I Y +AQLLG+V    +L   T        AL++   GV    A + EI +T   V   +AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155          
The following BLAST results are available for this feature:
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PIP22_ARATH5.643e-1635.26Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
AQP1_PIG5.643e-1636.49Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN5.643e-1637.16Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
PIP26_ORYSJ9.626e-1634.62Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP23_ARATH9.626e-1635.22Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP28_ORYSJ1.642e-1534.12Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP28_ARATH1.642e-1535.90Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
AQP2_RAT2.801e-1533.55Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
MIP_BOVIN3.658e-1534.21Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_SHEEP6.239e-1534.21Lens fiber major intrinsic protein OS=Ovis aries G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00147 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623056 ID=BQ623056; Name=BQ623056; organism=Citrus sinensis; type=EST; length=642bp
AGAGCTCGAAGCTAAAACTAAAACTTGCCAAGAAAATTAAAAAATGCCCG
GAATTGCTATCGGAAACCCGGCTGAGATCGGCCAGCCCGATGCCCTTAGG
GCGGCTGTCGCTGAGTTTTTCTCCATGGTCATTTTTGTTTTTGCCGGCCA
AGGGTCTGGCATGGCTTACAGCAAGCTCACGGACAATGGAGCAACAACAC
CAGCAGGTCTAGTGTCAGCATCAATAGCTCATGCATTTGCCCTCTTCGTG
GCAGTTTCTGTTGGCGCCAACATCTCCGGTGGACACGTGAACCCCGCTGT
TACTTTCGGTGCCTTTGTTGGCGGCCACATTACATTTGTCAGGAGTATTT
TGTACTGGATTGCCCAGTTACTCGGATCTGTTGTTGCTTGCTTGCTTCTC
AAGTTCTCCACTGGTGGATTGGAAACATCTGCTTTTGCCCTGTCATCTGG
AGTTGGTGCATGGAATGCAGTTGTGTTTGAGATTGTGATGACCTTTGGAC
TGGTCTACACGGGGTATGCCACAGCTGTTGACCCAAAGAGGGGAAACATT
GGCATCATTGCACCAATTGCAATTGGGTTATTGGTGGGGCCCACATCTTG
GCTGGGGGGGCCTTTGATGGGGCATCGATGACCCCTGAGTTT
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