BQ623056

Overview
NameBQ623056
Unique NameBQ623056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623056_ssr384 microsatellite BQ623056_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.239e-15
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTGYAT 523
            RA VAEF +M +FVF   GS + +     N  T     V  S+A   ++        +ISG H+NPAVT G  +   I+  R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV    AT
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT 156          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.064e-14
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTGYAT 523
            RA VAEF +M +FVF   GS + ++   +   T     V  S+A   ++        +ISG H+NPAVT G  +   I+ +R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV    AT
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLAT 156          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 1.390e-14
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTGYAT 523
            RA VAEF +M +FVF   GS + ++   +   T     V  S+A   ++        +ISG H+NPAVT G  +   I+ +R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV    AT
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLAT 156          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14
Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+I Y  AQLLG+V    +L   T        AL++   GV    A   EI +T   V   +AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14
Identity = 50/155 (32.26%), Postives = 80/155 (51.61%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGN 547
            RA +AEF + ++FVF G GS + +       A++P  ++  ++A    +   V    ++SG H+NPAVT    VG H++F+R+  Y  AQLLG+V    +L   T     G L  +  AL +   A  AV  E+ +T  LV   +A+  + +  N
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDN 156          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14
Identity = 57/156 (36.54%), Postives = 83/156 (53.21%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSA-SIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGN 547
            RA +AEF + ++FVF G GS + +          P  L S   IA AF L +   V A  ++SG H+NPAVT    VG H++F+R++ Y  AQLLG+V    LL   T      + +  AL++   A  AV  E+ +T  LV   +A + D +RG+
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALNW----------PQALPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFA-STDERRGD 155          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.097e-14
Identity = 48/145 (33.10%), Postives = 72/145 (49.66%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTGYAT 523
            RA VAEF +  +FVF   GS + +     N  T     V  S+A   ++        +ISG H+NPAVT G  +   I+  R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV    AT
Sbjct:   12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT 156          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.044e-14
Identity = 58/169 (34.32%), Postives = 85/169 (50.30%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   +  P E+      RA +AEF +  +F++    + M  SK T   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R+I Y I Q LG++    ++K F  G   G    A  ++ G    + +  EIV TF LVYT + +A D KR
Sbjct:   41 PPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKR 206          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.282e-14
Identity = 55/169 (32.54%), Postives = 86/169 (50.89%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLETS---AFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   +  P E+      RA +AEF +  +F++    + M  +  T   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y + Q LG++    ++K F  G  ET+   A  ++ G    + +  EIV TF LVYT + +A D KR
Sbjct:   37 PPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKR 202          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.282e-14
Identity = 57/169 (33.73%), Postives = 86/169 (50.89%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   +  P E+      RA +AEF +  +F++    + M  SK +   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R+I Y + Q LG++    ++K F  G   G    A  ++SG    + +  EIV TF LVYT + +A D KR
Sbjct:   38 PPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKR 203          
The following BLAST results are available for this feature:
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
AQP1_PONAB6.239e-1533.79Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE1.064e-1433.10Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_RAT1.390e-1433.10Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
MIP_RABIT1.815e-1434.21Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP2_MOUSE1.815e-1432.26Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
AQP2_BOVIN1.815e-1436.54Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
AQP1_HUMAN3.097e-1433.10Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
PIP13_MAIZE4.044e-1434.32Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ5.282e-1432.54Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP11_ORYSJ5.282e-1433.73Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00147 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623056 ID=BQ623056; Name=BQ623056; organism=Citrus sinensis; type=EST; length=642bp
AGAGCTCGAAGCTAAAACTAAAACTTGCCAAGAAAATTAAAAAATGCCCG
GAATTGCTATCGGAAACCCGGCTGAGATCGGCCAGCCCGATGCCCTTAGG
GCGGCTGTCGCTGAGTTTTTCTCCATGGTCATTTTTGTTTTTGCCGGCCA
AGGGTCTGGCATGGCTTACAGCAAGCTCACGGACAATGGAGCAACAACAC
CAGCAGGTCTAGTGTCAGCATCAATAGCTCATGCATTTGCCCTCTTCGTG
GCAGTTTCTGTTGGCGCCAACATCTCCGGTGGACACGTGAACCCCGCTGT
TACTTTCGGTGCCTTTGTTGGCGGCCACATTACATTTGTCAGGAGTATTT
TGTACTGGATTGCCCAGTTACTCGGATCTGTTGTTGCTTGCTTGCTTCTC
AAGTTCTCCACTGGTGGATTGGAAACATCTGCTTTTGCCCTGTCATCTGG
AGTTGGTGCATGGAATGCAGTTGTGTTTGAGATTGTGATGACCTTTGGAC
TGGTCTACACGGGGTATGCCACAGCTGTTGACCCAAAGAGGGGAAACATT
GGCATCATTGCACCAATTGCAATTGGGTTATTGGTGGGGCCCACATCTTG
GCTGGGGGGGCCTTTGATGGGGCATCGATGACCCCTGAGTTT
back to top