BQ623067 | Citrus Genome Database

Overview


Name	BQ623067
Unique Name	BQ623067
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	476

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.689e-21
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = 1

Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ ++   G D+ FECIG  +VM  A  S+  GWG++VI+GV   G  IS    +++ GR   G+ FGG+K +S +  + +  +  +++L+ F+TH +S  +IN AFDL+ EGKS+R VI
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

HSP 2 Score: 21.9422 bits (45), Expect = 1.689e-21
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3

Query:    3 IIGVDINPEKFEI 41
            II +D NP+KF++
Sbjct:  214 IIAIDTNPKKFDL 226

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.689e-21
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = 1

Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ ++   G D+ FECIG  +VM  A  S+  GWG++VI+GV   G  IS    +++ GR   G+ FGG+K +S +  + +  +  +++L+ F+TH +S  +IN AFDL+ EGKS+R VI
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

HSP 2 Score: 21.9422 bits (45), Expect = 1.689e-21
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3

Query:    3 IIGVDINPEKFEI 41
            II +D NP+KF++
Sbjct:  214 IIAIDTNPKKFDL 226

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.689e-21
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = 1

Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ ++   G D+ FECIG  +VM  A  S+  GWG++VI+GV   G  IS    +++ GR   G+ FGG+K +S +  + +  +  +++L+ F+TH +S  +IN AFDL+ EGKS+R VI
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

HSP 2 Score: 21.9422 bits (45), Expect = 1.689e-21
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3

Query:    3 IIGVDINPEKFEI 41
            II +D NP+KF++
Sbjct:  214 IIAIDTNPKKFDL 226

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.689e-21
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = 1

Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ ++   G D+ FECIG  +VM  A  S+  GWG++VI+GV   G  IS    +++ GR   G+ FGG+K +S +  + +  +  +++L+ F+TH +S  +IN AFDL+ EGKS+R VI
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

HSP 2 Score: 21.9422 bits (45), Expect = 1.689e-21
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3

Query:    3 IIGVDINPEKFEI 41
            II +D NP+KF++
Sbjct:  214 IIAIDTNPKKFDL 226

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.689e-21
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = 1

Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ ++   G D+ FECIG  +VM  A  S+  GWG++VI+GV   G  IS    +++ GR   G+ FGG+K +S +  + +  +  +++L+ F+TH +S  +IN AFDL+ EGKS+R VI
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

HSP 2 Score: 21.9422 bits (45), Expect = 1.689e-21
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3

Query:    3 IIGVDINPEKFEI 41
            II +D NP+KF++
Sbjct:  214 IIAIDTNPKKFDL 226

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.689e-21
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = 1

Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ ++   G D+ FECIG  +VM  A  S+  GWG++VI+GV   G  IS    +++ GR   G+ FGG+K +S +  + +  +  +++L+ F+TH +S  +IN AFDL+ EGKS+R VI
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

HSP 2 Score: 21.9422 bits (45), Expect = 1.689e-21
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3

Query:    3 IIGVDINPEKFEI 41
            II +D NP+KF++
Sbjct:  214 IIAIDTNPKKFDL 226

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.761e-21
Identity = 50/125 (40.00%), Postives = 77/125 (61.60%), Query Frame = 1

Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ EMT  G D+ FECIG  +VM  A  S+  GWG++VI+GV   G  IS    +++ GR   GT FGG+K ++ +  + +  +  ++ L  F+TH +    IN+AFDL+ +GKS+R VI
Sbjct:  243 KPVQQVLVEMTKWGVDHTFECIGNVNVMRSALESAHRGWGQSVIIGVAGAGKEISTRPFQLVTGRVWKGTAFGGVKGRTQLPGMVEDAMSGKIELAPFVTHTMELDKINEAFDLMHDGKSIRTVI 367

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.761e-21
Identity = 48/117 (41.03%), Postives = 70/117 (59.83%), Query Frame = 1

Query:   52 EMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            EMTDGG D+ F+C G   VM +A  +  +GWG +VI+GV   G  IS    +++ GR+  G  FGG+K +S +  +   YLD +L ++EFITH      INKAF+ +  G  +R V+
Sbjct:  262 EMTDGGCDFTFDCTGNVGVMRNALEACHKGWGTSVIIGVAAAGKEISTRPFQLVTGRTWKGAAFGGVKGRSQLPGIVNNYLDGKLKVEEFITHREPLAAINKAFEEMHAGDCIRAVV 378

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.859e-21
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ VI EMTDGG +   EC G A  M  AF    +GWG      V    +    + +  L  R++ GTFFG  KP++ +  +   Y+ KEL LD+FITH + F  IN AFDL+L G+ LRCVI
Sbjct:  251 KPVQEVIVEMTDGGVNRAVECTGNADAMISAFECVHDGWG------VAHKEAVFKTHPMNFLNERTLRGTFFGNYKPRTGLPGVVDMYMRKELELDKFITHSLPFSQINTAFDLMLRGEGLRCVI 369

HSP 2 Score: 23.0978 bits (48), Expect = 2.859e-21
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 3

Query:    3 IIGVDINPEKFEIGDK 50
            IIGVD+NP K E   K
Sbjct:  222 IIGVDLNPAKHEQAKK 237

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.064e-20
Identity = 46/125 (36.80%), Postives = 78/125 (62.40%), Query Frame = 1

Query:   28 KNLR*VIKEMTDGGADYCFECIGLASVMNDAFNSSREGWGKTVILGVEMHGSPISLNSIEILKGRSVCGTFFGGLKPKSDIATLAQKYLDKELNLDEFITHEVSFHDINKAFDLLLEGKSLRCVI 402
            K ++ V+ ++   G D+ FECIG  +VM  A  S+  GWG+++I+GV   G  IS    +++ GR   G+ FGG+K +S++  + +  +  ++ L+ F+TH +    IN+AF+L+ EGKS+R VI
Sbjct:  252 KPIKDVLLDINKWGIDHTFECIGNVNVMRQALESAHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPQMVEDSMKGDIQLEPFVTHTMPLDKINEAFELMHEGKSIRTVI 376

HSP 2 Score: 22.3274 bits (46), Expect = 1.064e-20
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3

Query:    3 IIGVDINPEKFEI 41
            II +D NP KFE+
Sbjct:  223 IIAIDTNPAKFEL 235

The following BLAST results are available for this feature:

BLAST of BQ623067 vs. ExPASy Swiss-Prot

BLAST of BQ623067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111


Match Name	E-value	Identity	Description
FRMA_SHISS	1.689e-21	39.20	S-(hydroxymethyl)glutathione dehydrogenase OS=Shig...	[more]
FRMA_ECOSM	1.689e-21	39.20	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECOLC	1.689e-21	39.20	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECOHS	1.689e-21	39.20	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECO57	1.689e-21	39.20	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECO24	1.689e-21	39.20	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_PASPI	1.761e-21	40.00	S-(hydroxymethyl)glutathione dehydrogenase OS=Past...	[more]
FADH_CANMA	1.761e-21	41.03	S-(hydroxymethyl)glutathione dehydrogenase OS=Cand...	[more]
ADH2_HORVU	2.859e-21	42.40	Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2...	[more]
FRMA_HAEIN	1.064e-20	36.80	S-(hydroxymethyl)glutathione dehydrogenase OS=Haem...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00158 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00158 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623067 ID=BQ623067; Name=BQ623067; organism=Citrus sinensis; type=EST; length=476bp
AGATTATAGGTGTTGATATAAATCCTGAAAAATTTGAGATAGGTGATAAA
GGAAATGACAGATGGGGGAGCAGACTATTGCTTCGAGTGCATTGGCTTGG
CGTCCGTAATGAATGATGCTTTCAACAGTAGCCGAGAGGGCTGGGGCAAG
ACGGTGATACTAGGAGTGGAGATGCATGGCTCCCCAATTTCTTTGAATTC
CATCGAGATTCTCAAAGGCAGAAGCGTTTGTGGCACATTTTTCGGAGGGC
TGAAACCCAAATCTGACATTGCTACTCTCGCCCAGAAGTACCTAGACAAG
GAGCTTAATCTGGACGAGTTCATAACACACGAAGTGAGCTTCCACGATAT
TAACAAAGCTTTCGACTTGCTCCTCGAAGGAAAAAGTCTGCGTTGCGTCA
TCTGGATGGATAAATTGATATAGGACAGCAAGTATTCTTCTTATATGGTA
CACTTTATTGAAATAATCAAGTTTGG