BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_LEGPH (50S ribosomal protein L27 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.314e-23
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS PK LGVK+FGG+ V  G IIVRQRGTRFHPG  VG G+DHTLYAL EG V+F       RK+V + P++
Sbjct:    2 AHKKAGGSTRNGRDSNPKYLGVKRFGGQFVNAGEIIVRQRGTRFHPGPGVGCGRDHTLYALVEGLVQFTTKGEKNRKYVTILPEQ 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_LEGPC (50S ribosomal protein L27 OS=Legionella pneumophila (strain Corby) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.314e-23
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS PK LGVK+FGG+ V  G IIVRQRGTRFHPG  VG G+DHTLYAL EG V+F       RK+V + P++
Sbjct:    2 AHKKAGGSTRNGRDSNPKYLGVKRFGGQFVNAGEIIVRQRGTRFHPGPGVGCGRDHTLYALVEGLVQFTTKGEKNRKYVTILPEQ 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_LEGPA (50S ribosomal protein L27 OS=Legionella pneumophila (strain Paris) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.314e-23
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS PK LGVK+FGG+ V  G IIVRQRGTRFHPG  VG G+DHTLYAL EG V+F       RK+V + P++
Sbjct:    2 AHKKAGGSTRNGRDSNPKYLGVKRFGGQFVNAGEIIVRQRGTRFHPGPGVGCGRDHTLYALVEGLVQFTTKGEKNRKYVTILPEQ 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_DINSH (50S ribosomal protein L27 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.314e-23
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LGVKKFGGE VIPGNII+RQRGT++ PGD VGMGKDHTL+A  EG V F+K    GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKFGGETVIPGNIILRQRGTKWWPGDNVGMGKDHTLFATVEGNVSFKK-GFKGRTFVSVLP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_IDILO (50S ribosomal protein L27 OS=Idiomarina loihiensis GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.553e-23
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNI+VRQRGT+FH G  VG+GKDHTL+A  EG+V F+      RK+V V
Sbjct:    2 AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNILVRQRGTKFHAGANVGIGKDHTLFATSEGKVSFDVKGSKNRKFVSV 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_DELAS (50S ribosomal protein L27 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.553e-23
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 277
            A KK  GST+NGRDSKPK LGVK FGGE +  G+IIVRQRGT+FHPGD VG+GKDHTLYAL +G V F
Sbjct:    2 AQKKGGGSTRNGRDSKPKMLGVKAFGGELITAGSIIVRQRGTKFHPGDNVGVGKDHTLYALVDGHVSF 69          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BIFAA (50S ribosomal protein L27 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.553e-23
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 277
            A KK A S++NGRDS  + LGVKKFGGE V+ GNIIVRQRGT+FHPG+ VGMGKDHTL+ALK+G VKF
Sbjct:    2 AHKKGASSSRNGRDSNAQYLGVKKFGGEAVVAGNIIVRQRGTKFHPGENVGMGKDHTLFALKDGSVKF 69          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_AMOA5 (50S ribosomal protein L27 OS=Amoebophilus asiaticus (strain 5a2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.553e-23
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+NGRDS  K LG+KKFGGE V+ GNI+VRQRGT+ +PG  VG+GKDHTLYAL EG V F+K    G+ +V VEP
Sbjct:    2 AHKKGGGSTRNGRDSASKRLGIKKFGGEHVLAGNILVRQRGTQHNPGKNVGLGKDHTLYALLEGTVLFKK-GTKGKSYVSVEP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACIAD (50S ribosomal protein L27 OS=Acinetobacter sp. (strain ADP1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.553e-23
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A+KK  GSTKNGRDS PK LGVK +GG+ V  GNIIVRQRGT FH G  VGMG+DHTL+A  +G VKFE     GR++V VE
Sbjct:    2 ASKKAGGSTKNGRDSNPKMLGVKIYGGQSVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVTVE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PSYWF (50S ribosomal protein L27 OS=Psychrobacter sp. (strain PRwf-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.248e-22
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK AGST+NGRDS PK LGVK FGG+ V+ GNIIVRQRGT FH G  VGMG+DHTL+AL +G VKF+      R++V V+
Sbjct:    2 AHKKAAGSTRNGRDSNPKMLGVKVFGGQDVVAGNIIVRQRGTEFHAGAGVGMGRDHTLFALTDGVVKFDTKGKFNRRYVSVQ 83          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_LEGPH7.314e-2362.3550S ribosomal protein L27 OS=Legionella pneumophil... [more]
RL27_LEGPC7.314e-2362.3550S ribosomal protein L27 OS=Legionella pneumophil... [more]
RL27_LEGPA7.314e-2362.3550S ribosomal protein L27 OS=Legionella pneumophil... [more]
RL27_DINSH7.314e-2365.0650S ribosomal protein L27 OS=Dinoroseobacter shiba... [more]
RL27_IDILO9.553e-2362.9650S ribosomal protein L27 OS=Idiomarina loihiensis... [more]
RL27_DELAS9.553e-2373.5350S ribosomal protein L27 OS=Delftia acidovorans (... [more]
RL27_BIFAA9.553e-2373.5350S ribosomal protein L27 OS=Bifidobacterium adole... [more]
RL27_AMOA59.553e-2363.8650S ribosomal protein L27 OS=Amoebophilus asiaticu... [more]
RL27_ACIAD9.553e-2364.6350S ribosomal protein L27 OS=Acinetobacter sp. (st... [more]
RL27_PSYWF1.248e-2263.4150S ribosomal protein L27 OS=Psychrobacter sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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