BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_WIGBR (50S ribosomal protein L27 OS=Wigglesworthia glossinidia brevipalpis GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GST+NGRDS  K LGVK FGG++  PGNIIVRQRGT+FHPG  VG GKD++LYALK G V F+K K   +K++++ PK
Sbjct:    2 AHKKAGGSTRNGRDSIGKRLGVKLFGGQKAYPGNIIVRQRGTKFHPGKNVGCGKDYSLYALKSGIVFFKKKK--NKKFINIIPK 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RHISN (50S ribosomal protein L27 OS=Rhizobium sp. (strain NGR234) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGT++H G  VG+GKDHT++AL  G V F + K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTKWHAGANVGLGKDHTIFALTAGNVDF-RTKANGRVYVSVMPK 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_METNO (50S ribosomal protein L27 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GS++NGRDS  + LGVKKFG E VI GNIIVRQRGTR+HPG  VGMG+DHTL+AL  GRV+F K    GR +V V P +
Sbjct:    2 AHKKAGGSSRNGRDSDGRRLGVKKFGNEAVIAGNIIVRQRGTRWHPGANVGMGRDHTLFALTAGRVQFAKK--HGRAYVTVVPAQ 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BIFLO (50S ribosomal protein L27 OS=Bifidobacterium longum GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 277
            A KK A S++NGRDS P+ LGVKKFGGE V+ GNIIVRQRGT FHPG  VGMGKDHTL+AL +G VKF
Sbjct:    2 AHKKGASSSRNGRDSNPQYLGVKKFGGEAVVAGNIIVRQRGTNFHPGHNVGMGKDHTLFALTDGSVKF 69          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BIFLI (50S ribosomal protein L27 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 277
            A KK A S++NGRDS P+ LGVKKFGGE V+ GNIIVRQRGT FHPG  VGMGKDHTL+AL +G VKF
Sbjct:    2 AHKKGASSSRNGRDSNPQYLGVKKFGGEAVVAGNIIVRQRGTNFHPGHNVGMGKDHTLFALTDGSVKF 69          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BIFLD (50S ribosomal protein L27 OS=Bifidobacterium longum (strain DJO10A) GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 277
            A KK A S++NGRDS P+ LGVKKFGGE V+ GNIIVRQRGT FHPG  VGMGKDHTL+AL +G VKF
Sbjct:    2 AHKKGASSSRNGRDSNPQYLGVKKFGGEAVVAGNIIVRQRGTNFHPGHNVGMGKDHTLFALTDGSVKF 69          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VEREI (50S ribosomal protein L27 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+NGRDS+PK LGVK FGG+R+  G+IIVRQRGTRFHPG  VGMGKDH+L+AL +G+V F       +  V+V P
Sbjct:    2 AQKKGGGSTRNGRDSQPKMLGVKVFGGQRITAGSIIVRQRGTRFHPGSNVGMGKDHSLFALVDGQVSFGIKGALSKPTVNVTP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SPHAL (50S ribosomal protein L27 OS=Sphingopyxis alaskensis GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GS++NGRDS  + LGVKKFGG+ VI GNIIVRQRGT+ +PG  VGMGKDHTL+A  +GRV+F   KL GRK+V V+
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKFGGQDVIGGNIIVRQRGTKVYPGVNVGMGKDHTLFATADGRVRFHDGKL-GRKYVSVD 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PECCP (50S ribosomal protein L27 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK  GST+NGRDS  + LGVK+FGGE V+ GNIIVRQRGT+FH G  VG GKDHTL+AL +G+V+FE      RK++ +
Sbjct:    2 AHKKAGGSTRNGRDSNAQRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGCGKDHTLFALTDGKVQFEVKGPKNRKYISI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_KLEP7 (50S ribosomal protein L27 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+AL +G+VKFE      RK++ +
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFALTDGKVKFEVKGPKNRKFISI 82          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_WIGBR2.128e-2261.9050S ribosomal protein L27 OS=Wigglesworthia glossi... [more]
RL27_RHISN2.128e-2263.1050S ribosomal protein L27 OS=Rhizobium sp. (strain... [more]
RL27_METNO2.128e-2263.5350S ribosomal protein L27 OS=Methylobacterium nodu... [more]
RL27_BIFLO2.128e-2273.5350S ribosomal protein L27 OS=Bifidobacterium longu... [more]
RL27_BIFLI2.128e-2273.5350S ribosomal protein L27 OS=Bifidobacterium longu... [more]
RL27_BIFLD2.128e-2273.5350S ribosomal protein L27 OS=Bifidobacterium longu... [more]
RL27_VEREI2.779e-2261.4550S ribosomal protein L27 OS=Verminephrobacter eis... [more]
RL27_SPHAL2.779e-2264.6350S ribosomal protein L27 OS=Sphingopyxis alaskens... [more]
RL27_PECCP2.779e-2260.4950S ribosomal protein L27 OS=Pectobacterium caroto... [more]
RL27_KLEP72.779e-2260.4950S ribosomal protein L27 OS=Klebsiella pneumoniae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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