BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_NEOSM (50S ribosomal protein L27 OS=Neorickettsia sennetsu (strain Miyayama) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.878e-24
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GS+ NGRDS  K LGVKKFG ERVIPG+IIVRQRGT+FHPG  VGMG DHT++A+K G V F    L GR++VHV
Sbjct:    2 ATKKAGGSSSNGRDSIGKRLGVKKFGSERVIPGDIIVRQRGTKFHPGRNVGMGSDHTIFAMKSGSVSFSV-GLRGRRFVHV 81          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SINMW (50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGT++HPG  VG+GKDHT++AL  G V F K K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGENVIAGNIIVRQRGTKWHPGANVGLGKDHTIFALTAGNVDFRK-KANGRVYVSVMPK 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_MESSB (50S ribosomal protein L27 OS=Mesorhizobium sp. (strain BNC1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNII+RQRGT++HPG  VGMGKDHTL+AL+ G V F K K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIIRQRGTKWHPGANVGMGKDHTLFALQAGAVSFAK-KANGRTYVSVNP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HAES2 (50S ribosomal protein L27 OS=Haemophilus somnus (strain 2336) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMGKDHTL+A  +G+VKFE      RK+V V
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSV 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HAES1 (50S ribosomal protein L27 OS=Haemophilus somnus (strain 129Pt) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMGKDHTL+A  +G+VKFE      RK+V V
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSV 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACTPJ (50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACTP7 (50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACTP2 (50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_THIDA (50S ribosomal protein L27 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.616e-24
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK+FGG+ V+ GNI+VRQRGT+FHPGD VG+GKDHTL+A  +G VKFE    + RK V +EP
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKRFGGQVVLAGNILVRQRGTQFHPGDNVGIGKDHTLFAKTDGTVKFEIKGAARRKVVRIEP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RHIME (50S ribosomal protein L27 OS=Rhizobium meliloti GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.616e-24
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GS++NGRDS+ K LGVKKFGGE VIPGNIIVRQRGT++H G  VG+GKDHT++AL  G V F K K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIIVRQRGTKWHAGANVGLGKDHTIFALTTGNVDFRK-KANGRVYVSVMPK 84          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_NEOSM3.878e-2467.9050S ribosomal protein L27 OS=Neorickettsia sennets... [more]
RL27_SINMW5.065e-2465.4850S ribosomal protein L27 OS=Sinorhizobium medicae... [more]
RL27_MESSB5.065e-2465.0650S ribosomal protein L27 OS=Mesorhizobium sp. (st... [more]
RL27_HAES25.065e-2465.4350S ribosomal protein L27 OS=Haemophilus somnus (s... [more]
RL27_HAES15.065e-2465.4350S ribosomal protein L27 OS=Haemophilus somnus (s... [more]
RL27_ACTPJ5.065e-2464.2050S ribosomal protein L27 OS=Actinobacillus pleuro... [more]
RL27_ACTP75.065e-2464.2050S ribosomal protein L27 OS=Actinobacillus pleuro... [more]
RL27_ACTP25.065e-2464.2050S ribosomal protein L27 OS=Actinobacillus pleuro... [more]
RL27_THIDA6.616e-2462.6550S ribosomal protein L27 OS=Thiobacillus denitrif... [more]
RL27_RHIME6.616e-2465.4850S ribosomal protein L27 OS=Rhizobium meliloti GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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