BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_AGRT5 (50S ribosomal protein L27 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.640e-24
Identity = 54/84 (64.29%), Postives = 66/84 (78.57%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GS++NGRDS+ K LGVKKFGGE VIPGNII+RQRGT++HPG  VG+GKDHT++AL  G V F + K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIILRQRGTQWHPGANVGIGKDHTIFALTAGNVNF-RTKANGRVFVSVAPK 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEDO (50S ribosomal protein L27 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALSDGKVKFEVKGPNNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEAM (50S ribosomal protein L27 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPNNRKFVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PSEU2 (50S ribosomal protein L27 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GST+NGRDS+ K LGVK +GG+ +IPGNIIVRQRGT+FH G  VGMGKDHTL+A  EG +KF+     GR++V + PK
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKMYGGQAIIPGNIIVRQRGTQFHAGYGVGMGKDHTLFAKVEGVIKFQVKGAFGRRYVSIVPK 85          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PSESM (50S ribosomal protein L27 OS=Pseudomonas syringae pv. tomato GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GST+NGRDS+ K LGVK +GG+ +IPGNIIVRQRGT+FH G  VGMGKDHTL+A  EG +KF+     GR++V + PK
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKMYGGQAIIPGNIIVRQRGTQFHAGYGVGMGKDHTLFAKVEGVIKFQVKGAFGRRYVSIVPK 85          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PSE14 (50S ribosomal protein L27 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GST+NGRDS+ K LGVK +GG+ +IPGNIIVRQRGT+FH G  VGMGKDHTL+A  EG +KF+     GR++V + PK
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKMYGGQAIIPGNIIVRQRGTQFHAGYGVGMGKDHTLFAKVEGVIKFQVKGAFGRRYVSIVPK 85          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_NOVAD (50S ribosomal protein L27 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GS++NGRDS  + LGVKKFGG+ V+ GNII+RQRGTR +PG  VGMGKDHTL+AL EGRV+F   KL GRK+V V+
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKFGGQEVVGGNIIIRQRGTRVYPGANVGMGKDHTLFALAEGRVRFHAGKL-GRKYVSVD 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HAMD5 (50S ribosomal protein L27 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE+V+ G IIVRQRGT+FHPG  VG GKDHTL+AL  G+VKFE      R +V +E
Sbjct:    2 AHKKAGGSTRNGRDSEGKRLGVKRFGGEKVLAGTIIVRQRGTKFHPGVNVGCGKDHTLFALSHGKVKFEVKGTKNRSFVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HAEIG (50S ribosomal protein L27 OS=Haemophilus influenzae (strain PittGG) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMG+DHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGRDHTLFATADGKVKFEVKGEKSRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HAEIE (50S ribosomal protein L27 OS=Haemophilus influenzae (strain PittEE) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMG+DHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGRDHTLFATADGKVKFEVKGEKSRKYVSI 82          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_AGRT58.640e-2464.2950S ribosomal protein L27 OS=Agrobacterium tumefac... [more]
RL27_SHEDO1.128e-2362.2050S ribosomal protein L27 OS=Shewanella denitrific... [more]
RL27_SHEAM1.128e-2363.4150S ribosomal protein L27 OS=Shewanella amazonensi... [more]
RL27_PSEU21.128e-2361.9050S ribosomal protein L27 OS=Pseudomonas syringae ... [more]
RL27_PSESM1.128e-2361.9050S ribosomal protein L27 OS=Pseudomonas syringae ... [more]
RL27_PSE141.128e-2361.9050S ribosomal protein L27 OS=Pseudomonas syringae ... [more]
RL27_NOVAD1.128e-2365.8550S ribosomal protein L27 OS=Novosphingobium aroma... [more]
RL27_HAMD51.128e-2363.4150S ribosomal protein L27 OS=Hamiltonella defensa ... [more]
RL27_HAEIG1.128e-2362.9650S ribosomal protein L27 OS=Haemophilus influenza... [more]
RL27_HAEIE1.128e-2362.9650S ribosomal protein L27 OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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