BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RK27_EMIHU (50S ribosomal protein L27, chloroplastic OS=Emiliania huxleyi GN=rpl27 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19
Identity = 48/72 (66.67%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHK 289
            A KK AGSTKNGRDS  K LGVK +G + V  G II+RQRG  F PG  VG+GKD+TL+ALKEG VKFEK K
Sbjct:    2 AHKKGAGSTKNGRDSNSKRLGVKVYGNQAVKAGGIIIRQRGLTFKPGSNVGVGKDYTLFALKEGLVKFEKMK 73          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_TRIEI (50S ribosomal protein L27 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+NGRDS  + LGVK++GG+ V  GNI+VRQRG++FH G+ VG+GKD+TL+AL EG V FE+ K   RK V V P
Sbjct:    2 AHKKGTGSTRNGRDSNSQRLGVKRYGGQVVKAGNILVRQRGSKFHAGNNVGVGKDYTLFALVEGMVTFER-KGKSRKKVSVYP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_STRAW (50S ribosomal protein L27 OS=Streptomyces avermitilis GN=rpmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK A ST+NGRDS  + LGVK+FGG+ V  G I+VRQRGT FHPG  VG GKD TL+AL  G V+F  H+  GRK V++ P
Sbjct:    2 AHKKGASSTRNGRDSNAQRLGVKRFGGQVVNAGEILVRQRGTHFHPGSGVGRGKDDTLFALDAGAVEFGTHR--GRKVVNIVP 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SALAI (50S ribosomal protein L27 OS=Salinispora arenicola (strain CNS-205) GN=rpmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK A S++NGR+S  + LGVK+FGG+RV  G II+RQRGT+FHPGD VG G+D TL+AL  G V+F   +  GRK V + P++
Sbjct:    2 AHKKGASSSRNGRESAAQRLGVKRFGGQRVNAGEIIIRQRGTKFHPGDLVGRGRDDTLFALAAGSVQFGTKR--GRKTVSIVPQQ 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RALEJ (50S ribosomal protein L27 OS=Ralstonia eutropha (strain JMP134) GN=rpmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+NGRDS+ K LGVK FGG+ +  G II+RQRGTR H GD VG+GKDHTL+AL +G V+F     + ++ V V P
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGQAINAGGIIIRQRGTRVHAGDNVGVGKDHTLFALVDGHVQFAVKGPAKKQHVSVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RALEH (50S ribosomal protein L27 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+NGRDS+ K LGVK FGG+ +  G II+RQRGTR H GD VG+GKDHTL+AL +G V+F     + ++ V V P
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGQAINAGGIIIRQRGTRVHAGDNVGVGKDHTLFALVDGHVQFAVKGPAKKQQVSVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_POLNS (50S ribosomal protein L27 OS=Polynucleobacter necessarius (strain STIR1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 277
            A KK  GST+NGRDS+ K LGVK FGGE +  G+II+RQRGTR HPG  VG+GKDHTL+AL +G+V+F
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGEYINAGSIIIRQRGTRVHPGANVGIGKDHTLFALIDGQVEF 69          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PARDP (50S ribosomal protein L27 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LGVK +GG+  + GNIIVRQRGT + PG  VGMG+DHTL+AL +G V F+K  L GR ++ V P
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKLYGGQLAVAGNIIVRQRGTTWWPGQNVGMGRDHTLFALTDGHVTFKK-GLKGRTYISVLP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_NITEC (50S ribosomal protein L27 OS=Nitrosomonas eutropha (strain C91) GN=rpmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  K LGVK++GGE +  G IIVRQRGT+FHPGD VG+G+DHTL+A  +G++ F       R+ V V P
Sbjct:    2 AHKKAGGSSRNGRDSHSKRLGVKRYGGEVIRAGGIIVRQRGTQFHPGDNVGIGRDHTLFAKVDGKIVFTIRGRLNRRTVAVIP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_JANMA (50S ribosomal protein L27 OS=Janthinobacterium sp. (strain Marseille) GN=rpmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  G+T+NGRDS+ K LGVK +GG+ +  G IIVRQRGT+ HPG+ VG+GKDHTL+AL +G+V F       R +V V P
Sbjct:    2 AHKKGGGTTRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTKMHPGENVGIGKDHTLFALTDGKVAFVTKGALQRHYVTVVP 84          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK27_EMIHU1.686e-1966.6750S ribosomal protein L27, chloroplastic OS=Emilia... [more]
RL27_TRIEI2.202e-1959.0450S ribosomal protein L27 OS=Trichodesmium erythra... [more]
RL27_STRAW2.202e-1959.0450S ribosomal protein L27 OS=Streptomyces avermiti... [more]
RL27_SALAI2.202e-1955.2950S ribosomal protein L27 OS=Salinispora arenicola... [more]
RL27_RALEJ2.202e-1956.6350S ribosomal protein L27 OS=Ralstonia eutropha (s... [more]
RL27_RALEH2.202e-1956.6350S ribosomal protein L27 OS=Ralstonia eutropha (s... [more]
RL27_POLNS2.202e-1966.1850S ribosomal protein L27 OS=Polynucleobacter nece... [more]
RL27_PARDP2.202e-1956.6350S ribosomal protein L27 OS=Paracoccus denitrific... [more]
RL27_NITEC2.202e-1955.4250S ribosomal protein L27 OS=Nitrosomonas eutropha... [more]
RL27_JANMA2.202e-1955.4250S ribosomal protein L27 OS=Janthinobacterium sp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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