BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RALME (50S ribosomal protein L27 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+NGRDS+ K LGVK FGG+ +  G IIVRQRGTR H G+ VG+GKDHTL+AL +G V+F     + ++ V V P
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGQAINAGGIIVRQRGTRVHAGENVGIGKDHTLFALVDGHVQFAVKGAAKKQQVSVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PORGI (50S ribosomal protein L27 OS=Porphyromonas gingivalis GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GS+KNGR+S+ K LGVK +GGE    GNI+VRQRGT  HPG+ VG+GKDHTLYALK G V F + K + R +V ++
Sbjct:    2 AHKKGVGSSKNGRESESKRLGVKVYGGEMAKAGNILVRQRGTVHHPGENVGIGKDHTLYALKSGVVVFTRKK-NDRSYVSIK 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PORG3 (50S ribosomal protein L27 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GS+KNGR+S+ K LGVK +GGE    GNI+VRQRGT  HPG+ VG+GKDHTLYALK G V F + K + R +V ++
Sbjct:    2 AHKKGVGSSKNGRESESKRLGVKVYGGEMAKAGNILVRQRGTVHHPGENVGIGKDHTLYALKSGVVVFTRKK-NDRSYVSIK 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PERMH (50S ribosomal protein L27 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A+KK+ GS KNGRDS  K LGVK++ G+ V  GNI+VRQRGT+ +PG  VG+G D+TL+AL +G+VKFE  K  G+K V V P
Sbjct:    2 ASKKSGGSAKNGRDSFSKRLGVKRYDGQVVKAGNILVRQRGTKIYPGKNVGLGNDYTLFALIDGKVKFETSK--GKKVVSVYP 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_GEOMG (50S ribosomal protein L27 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEK 283
            A KK  GST+NGRDS+ K LG KK+GGE V  GNII RQRGT+ HPG  VG GKD+TL+AL +G VKFE+
Sbjct:    2 AHKKGVGSTRNGRDSESKRLGCKKYGGENVKAGNIIYRQRGTQIHPGTNVGCGKDYTLFALIDGVVKFER 71          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_CAMJR (50S ribosomal protein L27 OS=Campylobacter jejuni (strain RM1221) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+N RDS  + LGVKKFGGE V  GNII+RQRGT  H G+ VGMGKDHT++AL +G VKFE+ K   RK V V P
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFER-KDKDRKKVSVYP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_CAMJJ (50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+N RDS  + LGVKKFGGE V  GNII+RQRGT  H G+ VGMGKDHT++AL +G VKFE+ K   RK V V P
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFER-KDKDRKKVSVYP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_CAMJE (50S ribosomal protein L27 OS=Campylobacter jejuni GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+N RDS  + LGVKKFGGE V  GNII+RQRGT  H G+ VGMGKDHT++AL +G VKFE+ K   RK V V P
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFER-KDKDRKKVSVYP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_CAMJD (50S ribosomal protein L27 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+N RDS  + LGVKKFGGE V  GNII+RQRGT  H G+ VGMGKDHT++AL +G VKFE+ K   RK V V P
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFER-KDKDRKKVSVYP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_CAMJ8 (50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+N RDS  + LGVKKFGGE V  GNII+RQRGT  H G+ VGMGKDHT++AL +G VKFE+ K   RK V V P
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFER-KDKDRKKVSVYP 83          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_RALME2.876e-1956.6350S ribosomal protein L27 OS=Ralstonia metallidura... [more]
RL27_PORGI2.876e-1958.5450S ribosomal protein L27 OS=Porphyromonas gingiva... [more]
RL27_PORG32.876e-1958.5450S ribosomal protein L27 OS=Porphyromonas gingiva... [more]
RL27_PERMH2.876e-1957.8350S ribosomal protein L27 OS=Persephonella marina ... [more]
RL27_GEOMG2.876e-1965.7150S ribosomal protein L27 OS=Geobacter metalliredu... [more]
RL27_CAMJR2.876e-1962.6550S ribosomal protein L27 OS=Campylobacter jejuni ... [more]
RL27_CAMJJ2.876e-1962.6550S ribosomal protein L27 OS=Campylobacter jejuni ... [more]
RL27_CAMJE2.876e-1962.6550S ribosomal protein L27 OS=Campylobacter jejuni ... [more]
RL27_CAMJD2.876e-1962.6550S ribosomal protein L27 OS=Campylobacter jejuni ... [more]
RL27_CAMJ82.876e-1962.6550S ribosomal protein L27 OS=Campylobacter jejuni ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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